Lcap028726.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- Lman1
- Assembly
- GCA_949126875.1
- Location
- OX421403.1:29922723-29927788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00048 0.098 14.8 0.2 2 21 75 94 74 95 0.94 2 11 0.78 1.6e+02 4.7 4.3 1 23 122 144 122 144 0.96 3 11 0.062 13 8.1 2.1 3 19 152 168 151 172 0.95 4 11 0.077 16 7.8 1.7 2 23 180 201 179 201 0.94 5 11 1.2e-05 0.0024 19.8 3.5 2 23 234 255 233 255 0.97 6 11 7.2e-06 0.0015 20.5 0.6 1 23 261 283 261 283 0.98 7 11 5e-05 0.01 17.9 1.2 3 23 291 312 289 312 0.90 8 11 3e-06 0.00061 21.7 0.6 1 23 337 359 337 359 0.98 9 11 4.5e-07 9.3e-05 24.3 0.9 1 23 365 387 365 387 0.99 10 11 2.2e-05 0.0045 19.0 1.5 3 23 395 415 393 415 0.98 11 11 0.0019 0.39 12.9 1.0 1 23 421 443 421 443 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATTTAAAACCAAATGATAAACTAGCTTTAAAAATAGAGATTAAAGAAGAGATTGTACAAGATGATTTCATATATATAGAAACTCCTGATATCAAGACTGAacccaatatattttttaatgatgcTGCTGAATGTAGTAATTTCAAATCAGAAGAAGTAAAAATGGAAATAGGAGATGAAGGTTTACATTATAATTATGAAGAGAACATACCTATATATTGTACAGTCTGCAACAGATCGTTTGAAACTACAAGTGGtttaataaatcatttaaaacaGAGATTAAGATGCAGATATCAAACTAAATTCTTCATTGCTCAATTTTGgaaatcttttttaaaaaaagtcgctaAACCTTTTAAATGCCAAGTGTGCCTTAAATatttttcttcAATTCATCAAAAAGACAAACATACGAAAGCTCATTTCGGTAAAGCTTGTGTGCTGTGTACTTTTTGTGGTAAAGCTTTTATTAAACCAAAAGAGTACTTGAAACATTGTGGAAACCATTTAACAAAACAGTTTCcaataaaatgtaaaaagtgCCTCAGGAGATTTCCCACGAAAATGGTTTATTTCAAACACTTAACGGCACATGAAAAATTGTCCAACAAACAATATAGATGTAAAATATGCTTTTCCGCACATTTGAAAAAGTCTTTATTAGAAAATCATATGAAAAAAGATAAAATGACTTGTTCGtattgcaataaaatattttgtaaaaaaagtggGTTGGAGAATCATCTACGATCTCACACAGGAGAAAAACCGTTCCAGTGTGCCGTTTGTAATTGGAGATTTAGTTTCAAGGGCAATTTGATCAAACACAGTCGAATACATACAGgcGATAAACCTCATTTGTGCAAAGTGTGTTTAAAAAGCTTCTCCCGTCCAGATTATTTAAAAAGGCATTATATTGGTGTACATAAAAAAGAAATTGGATTCCGTATACGTCGTCGAAATAATAAGAACAACAAGAAAAGTGTAGTGAAAGCACAATTTATCTGCAACATTTGTAACAAAGTTTACCCTTCGAAAACATCACTTACATCTCATACGAGGGTGCATAATAACGAAGACGCATTTCAATGCACCGTTTGTGACAAATCGTTTCGCTATAAAGGTTTATTGAACGGCCATATGAAGATACATTTGAACTACCGACCGTACGGTTGTACTTTGTGCCCGAAAACGTTTATAAAGCGTAACGATCTTACTCGACACACAAAGACACACACCAAAGAGAAAAATTTCAGATGCGAAATTTGCTTCGATAAATTTTCCAGAAAGGACGTCCTTCGATTACATCTTCGAGGACATACAGGACAAAGACCTTACGATGATGCTAAATCAGTACATAGAAGGTTCGAATATAAGTATTCATTCAAACCTCCGTACTTAGCTCAAAAAGACGGATCGGTACCATTTTGGGAATACGGTGGTAACGCGATAGCAAgttccgagaatgtgaggattgCTCCTTCTTTAAAAAGCCAGAAGGGTGCTATATGGACAAAACAGCCAGTTAATTTCGAGTGGTGGGAAGTTGATGTTGCTTTTAGAATAACTGGAAGAGGAAGAATTGGTGCCGATGGTTTGGCTTTTTGGTATACCCAAAACAAAGGATCATTTAACGGTGACATTTTTGGTTCCTCAGATCAATGGATTGGTCTTGGTGTATTTTTTGATTCATTTGACAATGATAACAAACACAATAATCCATATATTATGGCAGTACTGAATGATGGAACAAAACAATTTGAACACCAAAAtgATGGTACCACTCAGCAACTGGCTGGTTGTCTACGTGATTTTCGTAACAAACCCTACCCGACAAGagcaaaaatagaatattatcaaaatacacttactgttttatttaacaatggaaTGACTAATAACGAGAAAGAATATGAAATGTGCTTGAGAGCGGAGAATATAATTCTACCTAAAGGTGGATATTTTGGAGTTTCCGCTGCCACTGGAGGTTTAGCTGATGACCATGATGTAATACATTTTCTTACTAATAGTTTATATATTCCTGAACAAGCTCAACAAAACCAAGttGTAGGAGAAGATCAACAAAAATTACAACAAGAATATCAAGATTACCAGAATAAACTAGAAGCACAAAAAGCAGAATACAAAAAGGACCATCCTGACGAGAAACAACCTGACATAGAAGATTGGTTCGAGACAGAATCTCAAAGAGAATTACGTCAAATTTTCCAAGGCCAAAATCAAATTTACGATGTTCTCAgagaagtaaataaaaaaattgacgaAATTGTTGGACGGCAAGAAAGAACAATGAGTTTAATATCTCAGCAAGCTAACGTCGGTCAAGGAGGCGGTGCTCCGCCACCACCAGCCGGCGCCCCACCCGCTCAACCTGGAGATAGTATTAGAAGACATGAAGTTGACGCTTTATTTAACAACCACAATCTTTTTACTGGAAGTTTACAAGAAATTAAacaatTCGTATTAGATTTAAAAATGCGAGCAGACACAATTTTGAACAACCAAGCTAAACAACCAACTGCACAGGTACAGTCTGTTGGGTATGATACTCAATCTTTGATCAGCGAAATGCGGGATGGACTTAACAACgtgaaaaaaagtttaggaaaAATGTCTGAAAAGTCACCAACGCCTCAGAGTTGTCCGACAGTTAGTTGTGTCAGTACTACGATGGTCCTGGCCATCGCTGCCATACAATTAGGGATTATATTAGCTTATAATTTATATAGGGACAGCAGGGATAGTAGtagcaaaaaattttattag
- Protein Sequence
- MEDLKPNDKLALKIEIKEEIVQDDFIYIETPDIKTEPNIFFNDAAECSNFKSEEVKMEIGDEGLHYNYEENIPIYCTVCNRSFETTSGLINHLKQRLRCRYQTKFFIAQFWKSFLKKVAKPFKCQVCLKYFSSIHQKDKHTKAHFGKACVLCTFCGKAFIKPKEYLKHCGNHLTKQFPIKCKKCLRRFPTKMVYFKHLTAHEKLSNKQYRCKICFSAHLKKSLLENHMKKDKMTCSYCNKIFCKKSGLENHLRSHTGEKPFQCAVCNWRFSFKGNLIKHSRIHTGDKPHLCKVCLKSFSRPDYLKRHYIGVHKKEIGFRIRRRNNKNNKKSVVKAQFICNICNKVYPSKTSLTSHTRVHNNEDAFQCTVCDKSFRYKGLLNGHMKIHLNYRPYGCTLCPKTFIKRNDLTRHTKTHTKEKNFRCEICFDKFSRKDVLRLHLRGHTGQRPYDDAKSVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASSENVRIAPSLKSQKGAIWTKQPVNFEWWEVDVAFRITGRGRIGADGLAFWYTQNKGSFNGDIFGSSDQWIGLGVFFDSFDNDNKHNNPYIMAVLNDGTKQFEHQNDGTTQQLAGCLRDFRNKPYPTRAKIEYYQNTLTVLFNNGMTNNEKEYEMCLRAENIILPKGGYFGVSAATGGLADDHDVIHFLTNSLYIPEQAQQNQVVGEDQQKLQQEYQDYQNKLEAQKAEYKKDHPDEKQPDIEDWFETESQRELRQIFQGQNQIYDVLREVNKKIDEIVGRQERTMSLISQQANVGQGGGAPPPPAGAPPAQPGDSIRRHEVDALFNNHNLFTGSLQEIKQFVLDLKMRADTILNNQAKQPTAQVQSVGYDTQSLISEMRDGLNNVKKSLGKMSEKSPTPQSCPTVSCVSTTMVLAIAAIQLGIILAYNLYRDSRDSSSKKFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736084;
- 90% Identity
- iTF_00736084;
- 80% Identity
- -