Gnym022622.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- Lman1
- Assembly
- GCA_963978555.1
- Location
- OZ021712.1:706779-711265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.034 15.7 0.3 2 21 109 128 108 129 0.94 2 12 0.76 1.2e+02 4.6 4.3 1 23 151 173 151 173 0.96 3 12 0.014 2.2 10.1 2.7 3 23 181 201 180 201 0.95 4 12 0.0026 0.4 12.4 3.7 2 23 209 230 208 230 0.97 5 12 1.5 2.3e+02 3.7 1.7 1 22 238 259 238 259 0.91 6 12 0.0027 0.41 12.3 6.0 2 21 263 282 262 284 0.94 7 12 1e-05 0.0016 19.9 2.7 1 23 290 312 290 312 0.98 8 12 4.9e-05 0.0075 17.8 1.2 3 23 320 341 318 341 0.90 9 12 9.2e-05 0.014 16.9 1.8 1 23 363 385 363 385 0.97 10 12 4.4e-07 6.8e-05 24.2 0.9 1 23 391 413 391 413 0.99 11 12 2.4e-05 0.0037 18.8 1.2 3 23 421 441 419 441 0.98 12 12 0.0018 0.28 12.8 1.0 1 23 447 469 447 469 0.98
Sequence Information
- Coding Sequence
- ATGTTAGAAGAAACTTCAACATTTatagaaataattaaaaataatgagcAATCAATGGAACATATAGTAACAATAAAACAAGAAGACAATTTGTTCAAAACAGAACATTTAAAACCAAACGAATTACTAGCTTTAAAAATAAAGATTAAGGAAGAGATTGTACAAGATGAAGATGATGAATTTATAGAAACTCCTAAAATCAAGACTGAacccaatatattttttaacgaTGCTGATGGAAGTAGTCTTTTCAAGTCAGAAGAagtaaaaatggaaataggaGATGAAGGTTTACATTATAATTATGAAGagaatatacctatatattgtACAGTCTGCAACAGATCTTTCAAAACTACAAGCGGATTAGTAAATCATTTAAAACAGAGATTGAGATGCAGATATCAAACTCAATTTTGGAaatcttttttaaaaaaagtcgccAAACCTTTTAAATGCCAAGTGTGCCTTAAATATTTTTCTTCAATTCATCAAAAAGATAAACATACAAAAGCTCATTTTGGTAAAGCTTGTGTACTGTGTAGTTTTTGCGGTAAAGCTTTTATCAAACCGAAAGAGTACATGAAACATTGTAGAAACCACTTAACAAAACAGTTCCCGATCAAATGTAAAAAGTGCTTTAGGAGATTTCCCACAAAAACCTCTTATTACAAACACGTAACCACACATGAAAATTTGTACAAAAAGCAATACAGATGTAAAATATGCTTTACGGCACATTTGAAAAAGTCTTTATTGGAAAATCATATGAGAAAAGATAAACTGACATGCTCGTATTGCAATAAAATGTTTTGTAAAAAAAGTGGGTTGGTGAGTCATCTACGATGTCATACAGGAGAAAAACCCTTTCAGTGCCACGTTTGTAGCTGGAGATTCAGCTTCAAGGGCAATTTGATCAAACACAGTCGAATACACACAGGCGATAAACCTCATTTGTGCAAAGTATGCTTAAAAAGCTTCTCCCGTCCAGATTATTTAAAAAGACATTATATTGGTGTGCATAAAAAGGAAATTGGGTTTCGTAAACGtcgtcaaaataataaaaacaacaaaaaagtagCACAATTTATCTGCAACGTTTGTAATAAAGTTTGTCCTTCGAAAACATCACTTACATCTCATTCGAGGGTGCATAACAAACAAGACGCTTTTCAATGCACTGTTTGTGACAAATCTTTTCGCTATAAAGGTTTATTGAACGGCCACATGAAGATACATTTGAACTACCGACCGTACGGTTGTACTTTGTGTCCGAAGACTTTTATCAAACGTAACGATCTTACACGGCATACAAATACACACACCAAAGAGAAGAATTTCAGGTGCGAAATTTGCTTCGATAAGTTTTCCAGAAAAGATGTCCTTCGATTACATCTTAGAGGACACACTGGGCAAAGACCTTACCAtgATGCTAAATCGGTACATAGAAGATTCGAGTACAAGTATTCATTCAAGCCTCCGTACTTAGCACAAAAAGACGGATCGGTACCATTTTGGGAATACGGTGGTAaCGCGATAGCTAGTTCTGAGAATGTGAGGATTGCTCCTTCTTTAAAAAGCCAAAAAGGAGCTATATGGACAAAGCAGCCAATTAATTTCGATTGGTGGGAAGTTGATGTTTCTTTTAGAATAACTGGAAGAGGAAGAATTGGTGCCGATGGTTTGGCTTTTTGGTACACCCAAAACAAGGGATCATTTTCTGGAGACATATTTGGTTCCTCAGACCAATGGATTGGTCTTGGTGTATTTTTTGATTCATTTGACAATGATAACAAACACAATAATCCATATATTATGGCAGTACTGAACGAtggaacaaaaaaatttgaacaCCAAAATGATGGTACCACTCAGCAACTTGCTGGTTGTCTACGTGATTTTCGTAACAAACCCTACCCTACAAGAGCAAAAATAGAATATTACCAAAACACACTTACTGTTTTATTCAACAATGGAATGACTAATAACGATAAGGAATATGAAATGTGTTTAAGAGCGGAGAATGTTATTCTACCGAAAGGTGGATATTTTGGAGTCTCAGCTGCAACTGGAGGATTAGCTGACGACCATGACGTGATACATTTTCTTACTAATAGTTTATATATTCCCGAACAAACTCAACAAAACCAAGTTGTAGGGGAAGATCAACAAAAATTACAACAAGAATATCAAGATTACCAGAATAAATTAGAAGCACAAAAAGCAGAGTACAAAAAGGACCATCCCGATGAGaaagaacccGATGTAGAAGATTGGTTCGAATCAGAATCTCAAAGAGAATTACGTCAAATTTTCCAAGGCCAAAATCAAATCTACGAAGTTCTTAgagaagtaaataaaaaaatcgacGAAATTGTTGGTAGACAAGAAAGAACGATGAGTTTAATATCCCAACAAGCTAACCTTAATCAAGGAGGTGGAGCTCCGCCTCCACCAGCTGGCGCACCACCTGCACAACCTGGAGACACTATTAGAAGACACGAAGTCGATGCTTTATTCAACAACCACAATCTTTTTACAGGAAATCTACAAGAAATTAAGCAATTTGTGTTAGATTTAAAAATGCGAGCGGATACAATTTTGAACAACCAAGCAAAGCAACCGACTGCTCAGGTGCAATCTGTTGGGTACGATACTCAATCTTTAATCAACGAAATGAGGGATGGTCTTAACCACGTGAAAAAAAGCTTAGGAACAATGTCGGATAGGCAATCAATGCCTCAGAGCTGTCCAACTGTGAGTTGTGTCAGTACTACGATGGTTCTAACCATCGCTGCTGTACAGTTAGCTATTATATTAGCTTATAATTTATATAGggACAGCAGGGAAAGTAGtagcaaaaaattttattag
- Protein Sequence
- MLEETSTFIEIIKNNEQSMEHIVTIKQEDNLFKTEHLKPNELLALKIKIKEEIVQDEDDEFIETPKIKTEPNIFFNDADGSSLFKSEEVKMEIGDEGLHYNYEENIPIYCTVCNRSFKTTSGLVNHLKQRLRCRYQTQFWKSFLKKVAKPFKCQVCLKYFSSIHQKDKHTKAHFGKACVLCSFCGKAFIKPKEYMKHCRNHLTKQFPIKCKKCFRRFPTKTSYYKHVTTHENLYKKQYRCKICFTAHLKKSLLENHMRKDKLTCSYCNKMFCKKSGLVSHLRCHTGEKPFQCHVCSWRFSFKGNLIKHSRIHTGDKPHLCKVCLKSFSRPDYLKRHYIGVHKKEIGFRKRRQNNKNNKKVAQFICNVCNKVCPSKTSLTSHSRVHNKQDAFQCTVCDKSFRYKGLLNGHMKIHLNYRPYGCTLCPKTFIKRNDLTRHTNTHTKEKNFRCEICFDKFSRKDVLRLHLRGHTGQRPYHDAKSVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASSENVRIAPSLKSQKGAIWTKQPINFDWWEVDVSFRITGRGRIGADGLAFWYTQNKGSFSGDIFGSSDQWIGLGVFFDSFDNDNKHNNPYIMAVLNDGTKKFEHQNDGTTQQLAGCLRDFRNKPYPTRAKIEYYQNTLTVLFNNGMTNNDKEYEMCLRAENVILPKGGYFGVSAATGGLADDHDVIHFLTNSLYIPEQTQQNQVVGEDQQKLQQEYQDYQNKLEAQKAEYKKDHPDEKEPDVEDWFESESQRELRQIFQGQNQIYEVLREVNKKIDEIVGRQERTMSLISQQANLNQGGGAPPPPAGAPPAQPGDTIRRHEVDALFNNHNLFTGNLQEIKQFVLDLKMRADTILNNQAKQPTAQVQSVGYDTQSLINEMRDGLNHVKKSLGTMSDRQSMPQSCPTVSCVSTTMVLTIAAVQLAIILAYNLYRDSRESSSKKFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911352;
- 90% Identity
- iTF_00911352;
- 80% Identity
- -