Lcap016045.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421399.1:24568119-24571875[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.055 11 8.3 2.0 2 20 193 211 193 213 0.94 2 15 0.34 69 5.8 0.2 2 23 222 247 221 247 0.91 3 15 0.0057 1.2 11.4 1.1 1 22 325 346 325 346 0.96 4 15 0.00065 0.13 14.4 0.3 2 23 395 417 394 417 0.95 5 15 0.012 2.5 10.3 3.2 1 23 430 451 430 451 0.95 6 15 0.0037 0.76 12.0 1.5 1 19 458 476 458 479 0.89 7 15 3.3e-05 0.0067 18.4 1.5 3 23 487 508 486 508 0.97 8 15 0.00016 0.033 16.2 1.9 1 23 514 536 514 536 0.97 9 15 2.4e-06 0.0005 22.0 1.6 1 23 542 565 542 565 0.96 10 15 0.00065 0.13 14.3 0.9 1 23 572 594 572 594 0.97 11 15 0.0014 0.28 13.3 0.3 1 23 633 656 633 656 0.95 12 15 1.1e-05 0.0023 19.9 1.1 1 23 663 685 663 685 0.98 13 15 6.8e-07 0.00014 23.7 3.8 1 23 691 713 691 713 0.98 14 15 7.3e-07 0.00015 23.6 2.5 1 23 719 741 719 741 0.98 15 15 6.7e-06 0.0014 20.6 3.0 1 23 747 769 747 769 0.96
Sequence Information
- Coding Sequence
- atggctgaAAAGATAGAAATACGTGTTAATATTTCACCAGAAGAACTGGAACAAAAATGCCGAACGTGTCTTAAAAATGATGGAGTATTAAACTTATTCCTAACGCGGCATAAAGATATTATGTTGTATCACTTATTTCCAATGCTGTCTCTACCTGAAATGGATCCTACTGATAATCGATTACCGCAAAAAATATGTGGAATATGCGCAAAAgcgatttttgaattttatgcTTTTAAGGAACGCACATTGCAGACACAAGTAATTATAGAACTAGCTGCTGGAAAATTGcgttatttaaatattgaaaagcCAGATGAATCCAAACAAGGAACTGGTGATGACATAATTATTCATGCCAGTTCTGAAGTATatgaaattaaacaagaaattaacGACAATATAGTATATGAAGAATATAATACAGAGCATGATAGTAAGCATTTCAATAAAGATATTACCAATGATATACAGAAATCAAGTAATCTTGAAGTTCAAGAGGGCACATCTCAAGAGACTGTTGTTAAAAACAGAGATTCTAAAATGAGAGGTAGAACAATCAAACACACAGTTGCTAAATGTCGCTTTTGTAAAcgaaagtttaaaaaatattcagactATCTCAATCATAGAATAGAAGAAAGAGAAAAGAGAATTAAAGTACAATGTCCGATTTGCAATGAAAATATAATGTCATACAGAATGGAAAATCACCTTATAGTCCATAGAATTAAAGGACACAGTACTGTTAAAGAACATGTGTatttaaatgaaacaaatattgAGTTGAGTGAAGAAAAGCCTGACATATCTAATACacaaataaatttgataaaaaatccaaacaatcAACATATTAAGAAAGATGTAACTGATGATCATAGTTATCTGGATCCTGAAATGGCGATCGATCATGATTATTTAGAAAACTGTGAATCTGTGGATAACATGCAATTTGATGAAATTAATCAATATACTTGTCTTCTGTGTAATCTTAAATTTGAAACTAGAACAGAATACATAAACCACAGGcgaaaggaaaaagaaaaaagacaaAGAAAACCATGTCTAgtgtgtaataaaaaaatacctatGTTTAGAATGGAACAACATTCTTTGTTACACAAAGAAAACAAGTGCAAAAATTCTGTTTTGTTATTTGATGACCAAAATGGAGAATTAACTTGTAGCGGTTGCAATGAAATGTTCAATGATGAAAACGACTTTCAGCTACACATACAAAATAGCCATGGCACAAAACTAAATgcacaacaaaaaataaacaagcaTGCATGTTCTGTATGcaaaaaacattttagtttaGCCAAACTCAAAGATCACATGAGTGTTCATAATACAGATATGAAACAATATATGTGCGAGGTTTGTGGAAAACAGTTTTCCTACCAAACTAGTCTGCGTTTTCATAAACACTCTGAAGTAATAGAAGAATCTTTATGTGACCACTGTGGAAAAGCTTTTAGTTCAGAATACTATCTAAGACTTCACAAACAAAGAGTTCATGAGGAAGTTAAAAGTTTTGCTTGCGAGTTTTGTGGTAAACGCTttaaaaacaatcaaattttgattattCACATGCGTCACCATACTGGCGAAAGACCTTTTGAATGTCAGGTTTGTGGTAAGAAATTCACACTGAAAGCTCACCTTCAAAATCATATAAAAGCGCAGCATGATCCAAACGTTAAGAATTTTCAGTGTAGCACATGTTCCAGACGATTCTATAGCTCTGAACTACTTGCAGAACATGAAGAGAAACATGTTGCTGTTAAAAAAATGCAAACaaatagaaagaaaaaagataaATGTGATGTATGTAACCATTTAGTTTTAGATCTAGTGGGTCACAAACAATTACATGACGCAGGCTATACTTATGTTTGTGGATTTTGTAATGAAGGTTTTAATGAGAGGTATGACTTAACCACTCACAAGATATCCATTCATTTTGCTAAAAGACGAACATTCACTTGTGATATTTGTCAGAAGACTGTTACTACAAGCCAGATGTTACAAAGCCACCGTAGAATCCACACAGGAGAGAAACCATTTAAGTGTAAACTGTGTGACAAAAGTTTTACTCAAGGCAGTCACCTTAATACTCACATGAAATGGCACACTGGCGAAAAAGAAtttgaatgtgaatattgtaaaaaaagATTCTCATTAAAAGGAAATCTTAAACAACATCTCAGGTCACACACTGGTGACAAACCCTTTTGTTGTGACATTTGTTCAAAATGTTTTCCTACAGCATCTAGCTTGAGAAAACATATAGGTATTCACTATAGGCAATGTGAACGTTCGCATTAA
- Protein Sequence
- MAEKIEIRVNISPEELEQKCRTCLKNDGVLNLFLTRHKDIMLYHLFPMLSLPEMDPTDNRLPQKICGICAKAIFEFYAFKERTLQTQVIIELAAGKLRYLNIEKPDESKQGTGDDIIIHASSEVYEIKQEINDNIVYEEYNTEHDSKHFNKDITNDIQKSSNLEVQEGTSQETVVKNRDSKMRGRTIKHTVAKCRFCKRKFKKYSDYLNHRIEEREKRIKVQCPICNENIMSYRMENHLIVHRIKGHSTVKEHVYLNETNIELSEEKPDISNTQINLIKNPNNQHIKKDVTDDHSYLDPEMAIDHDYLENCESVDNMQFDEINQYTCLLCNLKFETRTEYINHRRKEKEKRQRKPCLVCNKKIPMFRMEQHSLLHKENKCKNSVLLFDDQNGELTCSGCNEMFNDENDFQLHIQNSHGTKLNAQQKINKHACSVCKKHFSLAKLKDHMSVHNTDMKQYMCEVCGKQFSYQTSLRFHKHSEVIEESLCDHCGKAFSSEYYLRLHKQRVHEEVKSFACEFCGKRFKNNQILIIHMRHHTGERPFECQVCGKKFTLKAHLQNHIKAQHDPNVKNFQCSTCSRRFYSSELLAEHEEKHVAVKKMQTNRKKKDKCDVCNHLVLDLVGHKQLHDAGYTYVCGFCNEGFNERYDLTTHKISIHFAKRRTFTCDICQKTVTTSQMLQSHRRIHTGEKPFKCKLCDKSFTQGSHLNTHMKWHTGEKEFECEYCKKRFSLKGNLKQHLRSHTGDKPFCCDICSKCFPTASSLRKHIGIHYRQCERSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736032;
- 90% Identity
- -
- 80% Identity
- -