Gnym018993.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021709.1:19559220-19562149[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.052 8 8.3 2.0 2 20 193 211 193 213 0.94 2 15 1 1.6e+02 4.2 0.2 2 23 222 247 221 247 0.75 3 15 0.0011 0.17 13.5 0.6 1 22 321 342 321 342 0.96 4 15 0.0033 0.52 12.0 0.1 2 23 391 413 390 413 0.95 5 15 0.004 0.61 11.8 3.1 1 23 426 447 426 447 0.96 6 15 0.0069 1.1 11.0 1.0 1 19 454 472 454 475 0.89 7 15 3.6e-06 0.00056 21.4 2.4 3 23 483 504 482 504 0.98 8 15 4.8e-05 0.0073 17.8 2.4 2 23 511 532 510 532 0.96 9 15 8.9e-08 1.4e-05 26.4 2.2 1 23 538 561 538 561 0.96 10 15 0.00014 0.022 16.4 1.2 1 23 568 590 568 590 0.96 11 15 0.00065 0.1 14.3 0.4 1 23 629 652 629 652 0.95 12 15 1.1e-05 0.0017 19.9 1.1 1 23 659 681 659 681 0.98 13 15 2.2e-06 0.00034 22.0 3.8 1 23 687 709 687 709 0.98 14 15 6.9e-07 0.00011 23.6 2.5 1 23 715 737 715 737 0.98 15 15 3.4e-05 0.0052 18.3 3.0 1 23 743 765 743 765 0.95
Sequence Information
- Coding Sequence
- ATGGCTGAAAAGATAGAAATACGTGTTAATATTCCATCAGAAGAACTGGAACAAAAATGCCGCACGTGTCTTAAAAATGATGGAGTACTAAACTTATTCTTAACGCGACATAAAGAAGTTATGTTATATCATTTATTTCCAATGCTGTCTCTACCTGAACTGGATCCTACTGATAATCGATTACCACAAAAAATATGTGGAATATGCGCTaaagcaatttttgaattttatgcTTTTAAAGAGCGTACATTGCAGACCCAAGTAATTATCGAACTGGCTGCTGGAAAATTGCgctatttaaatattgaaaagccAGATGATTCCAAAAAAGGCACTGGTGACGACATCATTATCCATGCCAGCTCTGAGGTATGTAAAATTAAAGAAGAAATTAATGACAATATAGTGATTGAAGAAGATAATTCAGAGCAAGATAATAAGAATTTCAATAAAGATATTGCCATTGATATACAGAAATCAAGTGATTTTGAAGATCAAAAGATCAGTTCACCAGAGAGTGTTGTTGAAAACAGTGATTCTAATATAGGAGGTCTAACAATAAAACGCACAGTTGCTAAATGTCGGTTTTGTAAAcgaaagtttaaaaaatattcagacTATCTCAATCATAGAATAGAAGAAAGAGAAAAGAGAATTAAAGTACAATGTCCAATATGCAGTGAAAGTATAATGTCATATAGAATGGAAAATCACCTTTTAGTCCATAGAATCAAAGGGCACAGTACTGTTAAAAAACATGTGTATTTAAATGAAGCAAATATTGAGTTGAGTGAAGAAAAACCTAAAGACATATATAAGTCACAAATCAAAAATtcaaacaataaacaaattaagaaAGATGTAAGTTATGATCATACTTATCTGGATGAAATGGAAATTGATCTTTATACAGAAAACTGTGAATCTGTAGATGACATGCAAATTGATGAAATCAACAAATATACCTGTCTGATTTGTAATCTTAAATTTGAAACTAGAGAAGAATACATAAACCACAGGcgaaaggaaaaggaaaaaagaCAAAGAAAACCATGTCAAGTGTGTAACGAAAACATACCTTTGTTTAGAATGGAACAACATTCTTTGCTACACAAAGAAAACAAATGCGAAAATGCTGATTTGTTAATAGATGACCGAAATGGTGAATTAACTTGTAGTGGCTGCAATGTAATGTTCAATGATGAAAACGCCTTTGAGATACACATACAAAATATCCATGGGGAAAAACTACAttcacaacaaaaaataaacaagCATGCATGTACTGTATGCAACAAACATTTTACATTAGCCAAACTCAAAGAGCACATGAGTGTTCATAACGCAGATAAGAAACAATATATGTGCGAGGTTTGTGGAAAACAGTTTGCGTACCAAACCAGTCTGCGTTTTCATAAACACTCTGAAGTAATAGAAGAATCTTTATGCGATCATTGTGGAAAAGCTTTTAGCTCGGAATACTACTTGAGAAAACACAAACGAAGAGTTCATGAGGAAGATAAAGGTTGTGCATGTGAGTTTTGTGGAAAACTCTTCAAAAACAATCAAATGTTAAATATTCATATGCGTAACCATACTGGGGAAAAACCCTTTGAATGTCAGATTTGTGGTAAGAAATTCACACAAAAAAATCACCTTCAAGCACACATAAGAGGGAAGCATGAGCAAAACGATAAGAATTTTCAGTGTAAATTTTGTTCCCGACGATTCTCTAGCTCTGAGCAACTTGCAGAACATGAAGAGAATCATGATGCTGTTAaaaaaatgcaatcaaatagaagaaaaaaagataaatgtgacGTATGCAACCATTTAGTTCTAGATCTAGTGGGCCATAAAGCATTACACGAAGCAGGTTATACTTATGTTTGTGGATTTTGTAATGAAGGTTTTACTGAGAGGTACGACTTAACCACTCACAAGATATCACTTCATTTTGCTAAAAGACGAATATTCACTTGTGATATTTGTCAGAAGACTGTTACCACAAGTCAGATGCTACAAAGTCACCGAAGAATCCATACCGGAGAGAAACCATTCAAGtgtaaactgtgcgaaaaaAGTTTCACTCAAGGCAGTCACCTTAACACTCACATGAAGTGGCACACTGGAGAAAAAGAATTTGAGTGtgaatattgtaaaaaaagatTCTCCTTAAAAGGAAATCTTAAACAACATCTCAGGTCGCACACTGGTGATAAACCCTTTTGTTGTGAAGTATGTTCAAAATGTTTTCCTACAGCGTCTAGCTTGAGAAAACATGTAGGTATTCACTACAGGCAGAAAGTTAAACAGTTAGAAGAGAATTCAATGTCTTCTTAA
- Protein Sequence
- MAEKIEIRVNIPSEELEQKCRTCLKNDGVLNLFLTRHKEVMLYHLFPMLSLPELDPTDNRLPQKICGICAKAIFEFYAFKERTLQTQVIIELAAGKLRYLNIEKPDDSKKGTGDDIIIHASSEVCKIKEEINDNIVIEEDNSEQDNKNFNKDIAIDIQKSSDFEDQKISSPESVVENSDSNIGGLTIKRTVAKCRFCKRKFKKYSDYLNHRIEEREKRIKVQCPICSESIMSYRMENHLLVHRIKGHSTVKKHVYLNEANIELSEEKPKDIYKSQIKNSNNKQIKKDVSYDHTYLDEMEIDLYTENCESVDDMQIDEINKYTCLICNLKFETREEYINHRRKEKEKRQRKPCQVCNENIPLFRMEQHSLLHKENKCENADLLIDDRNGELTCSGCNVMFNDENAFEIHIQNIHGEKLHSQQKINKHACTVCNKHFTLAKLKEHMSVHNADKKQYMCEVCGKQFAYQTSLRFHKHSEVIEESLCDHCGKAFSSEYYLRKHKRRVHEEDKGCACEFCGKLFKNNQMLNIHMRNHTGEKPFECQICGKKFTQKNHLQAHIRGKHEQNDKNFQCKFCSRRFSSSEQLAEHEENHDAVKKMQSNRRKKDKCDVCNHLVLDLVGHKALHEAGYTYVCGFCNEGFTERYDLTTHKISLHFAKRRIFTCDICQKTVTTSQMLQSHRRIHTGEKPFKCKLCEKSFTQGSHLNTHMKWHTGEKEFECEYCKKRFSLKGNLKQHLRSHTGDKPFCCEVCSKCFPTASSLRKHVGIHYRQKVKQLEENSMSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00911313;
- 90% Identity
- -
- 80% Identity
- -