Lcap013451.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea capreae
Gene Symbol
ZFX
Assembly
GCA_949126875.1
Location
OX421398.1:28571390-28578362[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0011 0.23 13.6 1.4 1 23 99 121 99 121 0.98
2 23 0.017 3.5 9.9 0.2 1 22 127 148 127 150 0.90
3 23 0.013 2.7 10.2 0.1 2 23 158 181 157 181 0.96
4 23 0.0042 0.86 11.8 0.1 2 23 188 209 187 209 0.97
5 23 0.0013 0.26 13.5 2.7 2 23 221 242 220 242 0.97
6 23 0.0014 0.29 13.3 0.9 1 23 268 290 268 290 0.97
7 23 6.9e-06 0.0014 20.6 0.5 1 23 296 318 296 318 0.99
8 23 3.1e-05 0.0063 18.5 0.7 1 23 324 347 324 347 0.96
9 23 0.0012 0.26 13.5 2.1 1 23 357 380 357 380 0.95
10 23 1.9e-05 0.0038 19.2 2.0 1 23 437 459 437 459 0.99
11 23 7.1e-06 0.0014 20.5 2.2 1 23 465 488 465 488 0.97
12 23 0.067 14 8.0 0.3 2 23 494 515 493 515 0.97
13 23 4.7e-05 0.0097 17.9 3.7 1 23 580 602 580 602 0.98
14 23 2.9e-06 0.0006 21.7 1.1 1 23 608 630 608 630 0.98
15 23 1.9e-06 0.00039 22.3 3.7 1 23 636 658 636 658 0.97
16 23 0.0005 0.1 14.7 2.2 1 23 664 687 664 687 0.97
17 23 0.15 30 7.0 2.9 3 22 857 876 855 876 0.93
18 23 2.6 5.3e+02 3.0 0.6 8 23 916 931 910 931 0.91
19 23 0.00026 0.053 15.6 1.9 1 23 955 977 955 977 0.97
20 23 1.2e-05 0.0024 19.9 1.2 1 23 983 1005 983 1005 0.99
21 23 0.00018 0.036 16.1 3.9 1 23 1012 1034 1012 1034 0.97
22 23 0.029 5.9 9.2 0.2 1 19 1040 1058 1040 1060 0.92
23 23 0.00089 0.18 13.9 0.4 3 23 1241 1262 1240 1262 0.95

Sequence Information

Coding Sequence
atgctaacctcaaataatttaaatgctAATGCGACAGAAACTTCTCTTTCCACTTTCTATGTTATTCCTTTAGACACTGTTTTAAAATCTTCTGCTGATTACGGACAAGGAACTGTTTATCTTATTAATAATGAAAACCAACAgcaagacaattatcatttatcagaGAATTCAGAAGTATGTAATAGTAGCTCCATTCAACAGTTAgcagaacaacaatcaataatCCAAGGAGCTGAAAAACAAACTAATGAAATATGTGTACTGCCTTTACCTGAACCCCCAGAATCAAAATATACATGTCCCAAATGTGAGAGCACTTTCAAAACCATTAAAGAATATAAAGATCATTTAAAATGGCACAAATCCCAGAAAAACTTCAAATGTAGTCAATGTTCAATAGGTTATAATAATGAAGTTAATTTGAAGATACATAATGAATTGATTCACACTGCAGGAAACAACTTAAAGAGCTGTCCAATTTGTGGGGTTGGTTTGAAATTCAAAAGAACTGCAGGATTGAGATCACATTTGATGATACATCAAACTGAGGAAGTACAAAGTTGTGAAGAGTGTGATGCAGAATTTGATAAAGAGGATGAGTATGTTCAGCACATGACAACCCATTCcacaaaaaagaataatgacTTGCCTTCTTTAACTTGCTCCCATTGTGAACTACAATTTCAGACAAAAGACCAACTAAGACTTcacatttctaagcatattaaAGCATTGAAGGGATTTAGGAAAcgtaaaaagaaaaatactagATCTAAAAAGAAGTCATATACTCAAGTATATAATtgcaaaatttgcaaaaaaggttttttaaaacaATCACTACTACTTCGACATGAAATGATACATAGTGGTGAAAAACCTTTTAAGTGTAGTATTTGTGATCAATCTTTCATTCAGAAGGGAACAATGCAAGTTCATCTATTAACACATACAGGAGTCAAACCATTTTCTTGCACTTTGTGTCCTGCAAAATTCAACCAAAAAGGAAATCTGAGAGCTCACCTCAAAAATACCCATACAGTACCATACGGTGGTCAGAAGACCTTCAAATGTCCCCACTGTGAttgtattttcaaaacaattgcTTCTCTTAATGGTCATGTCACTAAGGCTCATTTAAGATCTAACCAGAATGAGGAAAACATTATAAACAATgtgatgaaaaatttaaaagatcTAGAAGAACACAATTTGGATCAGTATGTAACTTTAACCGAATCATCAAATGGAGATGTTGAAAAAAAGTATACTGTACAATTAAAGAGGATAGGGGATGTAAAGTGGTATAGGTGTATGCATTGCACTAAGATGTTGAAAAAACCGTCTGATCTTATTAAACATATTCGAGTACATACCAAAGAAAAACCGTTTGagTGTAAAATatgtaataaacaattttcaatgaaaTCTACATTAATTTCTCATATGAGTAAAAAGCACCAGATGGAAAAATTAAAGTGTGGTGTgtgtgaaaatacatttttaaccaCACAGTCTCTTATTGCCCATATCAAGAAGCATGTGAATGGTAATGATAATGTTGGAAAGGCTTTACAAAATGATTCACTACAAGATTCACTGAATAAAACACCATCTGTGATTAACAAGATACTGAAGCAACCTCTGTTTCAAACTGTCTATGGTACATTGACATTTAAACCACCTAGATCTAAAATTTCTTATACAGATAGTAACTCTTCAATATCTAGACCTTTTCAATGTCTAACATGTCATGCAAGATTTACAAGAAGATACGATCTCAATAGACATATTAAAGAACACGAAGGAGATAAAAAATTCAAGTGCACTATATGCCCTAAggCATTTGTGACATCTTACAGGTTGAGAGATCACATGAATTATCACAATAACATCAAGAATTACGCTTGTGAACAATGtaataaaagattttttaatTCTTCGCATCTTAGGAGACATATGATAAGTCATAGTAACCTCAGACCGTATACGTGTCCATATTGCTTTAAGAACTTTCAAACACTTTCTCTGACTAGGCGACATATTAAGCTTATGCATAAAAAAGAAGCTTTGGCAGAGGCTGAAAGGAAGGAAGTAGAGAAAGAAACTGTTGATGGTTTACCTTTAGCAACAAGTGCAATAATGAACAATGTatcaaaacttgaaaatataccGCAAACAGATGGTTTGCAAGGACACATTATTCCCGAAGACCCTTCTGTTTCTACTGAAGTTATAAGTACAAATACTGGAATAGAAAATACCGATTTAAATACGGGTCTTCAAACTTTTTACGTCAGCCTTGAAGATTTTCAGATGATAAATAATGCTGTTGTTAACATGAATTCTATAAACGATATCGTACCAacCCCCGAACATTCTCAAATTGACTCATCATTAaaagaaaatcaagaaaatccATTAATAGTGTATACACATCCTTTTGAAAACACCGACAAAACAGCGACGACAACCTCGGAAACAATTTTTGATGGCAATACAGTTTTTCAAACATCCTCAGGTTTGAATGAagtaaaaactgtttttgaCGATGCTAGTATAATATGTATGCACTGTAATCAAATGTATTCAAGTTTcataaactttcaaaaacatacCTGCACCGGTAATCCAGATCAAGATACTAATATAAAGGGAATACAAGAAGTGGAAAGAACAGAAGAAACTAATACCGGACGAATGAATGAATCTTTTAATAGGTTACAATGTACGGACAGTAAAAAGtcgttaaaaaataatgttttgttcaaaaaacatatttccaagcattcgTCCTCTGAAAATAACAATGTTAATAGCAAAATTGCTCAATTGAAACGGTCTAGTACGACCGGAAATTATGCCTGTGTATTCTGTGCGAAGTTATTTAAGAAACCGTCTGATTTGGAAAGGCATCATCGCACGCACACTGGGGAAAAACCTTTCACTTGTGACATATGTAAAAAGACATTCTCATTGAAAGCAACACTCAACGGTCATCTTAAAACCCACGATCCTAACCACAAACAATTTTGCTGCGATATTTGCGATTGCGTGTATTCATCCAAAACTAGCTTAAAAGTCCACATGACTATACATACAGgCGCTATGCCTTACAAATGTACAATTTGCAACACGGACTTTCGAACGTTAGGCGCTAAAAAATCTCACGAAGCTGCAGGTAATTGCGCAGCTCATAAAAAGAAAACTGAACGAACGACGAAAAGTAAATTAgcagattttatcaaaaatacgaCGACTCGATCTGTTCCCAGTAATAATAGTAAAGAAGAGATACAAAATAATGTTAATGTTTTACCGGAATATGTTCCTTTCGAAAGTTTAGGTTTGATGATGGATCCTAATAACCTGACAATTCAACCCCAAACTTTAGACCTTTCCTCTCAAATAGTAAGCTTGGACATACCCCCAGCTATGTTATCAACTATCCCAGAAAACCAAATAACTGTCGATTCATCCAATTTACTTCAACAACTTCGAATGTCCGACATGGTATTGACTACTAATGAAACGGGGACAGTACCTTCGCTAATTCTGGACGATGTTAGTTTTTTGGATTTGAATACACCCACTAATAACCTTCAAATAATTACCTTACCAGAAAATGATGGAGCGGGAGTGACTATTAGTATAGAAGAGCCAAACAATGgaATAAGAATGGAGACCAAAACCAAAAGACCAAAACAGGCGGCAGCATGTGACGTTTGTTCTAAGGTGTTAGCTTCCAAAGATAGTTTGAAGAGACACAAGAAAAATGTCCATGGAGATAAAAAGAAAGTTACTATAGAGTGTGATATTAAAGACAATTCTTTCTGTGAGAAAAAGGATGTTTAA
Protein Sequence
MLTSNNLNANATETSLSTFYVIPLDTVLKSSADYGQGTVYLINNENQQQDNYHLSENSEVCNSSSIQQLAEQQSIIQGAEKQTNEICVLPLPEPPESKYTCPKCESTFKTIKEYKDHLKWHKSQKNFKCSQCSIGYNNEVNLKIHNELIHTAGNNLKSCPICGVGLKFKRTAGLRSHLMIHQTEEVQSCEECDAEFDKEDEYVQHMTTHSTKKNNDLPSLTCSHCELQFQTKDQLRLHISKHIKALKGFRKRKKKNTRSKKKSYTQVYNCKICKKGFLKQSLLLRHEMIHSGEKPFKCSICDQSFIQKGTMQVHLLTHTGVKPFSCTLCPAKFNQKGNLRAHLKNTHTVPYGGQKTFKCPHCDCIFKTIASLNGHVTKAHLRSNQNEENIINNVMKNLKDLEEHNLDQYVTLTESSNGDVEKKYTVQLKRIGDVKWYRCMHCTKMLKKPSDLIKHIRVHTKEKPFECKICNKQFSMKSTLISHMSKKHQMEKLKCGVCENTFLTTQSLIAHIKKHVNGNDNVGKALQNDSLQDSLNKTPSVINKILKQPLFQTVYGTLTFKPPRSKISYTDSNSSISRPFQCLTCHARFTRRYDLNRHIKEHEGDKKFKCTICPKAFVTSYRLRDHMNYHNNIKNYACEQCNKRFFNSSHLRRHMISHSNLRPYTCPYCFKNFQTLSLTRRHIKLMHKKEALAEAERKEVEKETVDGLPLATSAIMNNVSKLENIPQTDGLQGHIIPEDPSVSTEVISTNTGIENTDLNTGLQTFYVSLEDFQMINNAVVNMNSINDIVPTPEHSQIDSSLKENQENPLIVYTHPFENTDKTATTTSETIFDGNTVFQTSSGLNEVKTVFDDASIICMHCNQMYSSFINFQKHTCTGNPDQDTNIKGIQEVERTEETNTGRMNESFNRLQCTDSKKSLKNNVLFKKHISKHSSSENNNVNSKIAQLKRSSTTGNYACVFCAKLFKKPSDLERHHRTHTGEKPFTCDICKKTFSLKATLNGHLKTHDPNHKQFCCDICDCVYSSKTSLKVHMTIHTGAMPYKCTICNTDFRTLGAKKSHEAAGNCAAHKKKTERTTKSKLADFIKNTTTRSVPSNNSKEEIQNNVNVLPEYVPFESLGLMMDPNNLTIQPQTLDLSSQIVSLDIPPAMLSTIPENQITVDSSNLLQQLRMSDMVLTTNETGTVPSLILDDVSFLDLNTPTNNLQIITLPENDGAGVTISIEEPNNGIRMETKTKRPKQAAACDVCSKVLASKDSLKRHKKNVHGDKKKVTIECDIKDNSFCEKKDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00736013;
90% Identity
iTF_00736013;
80% Identity
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