Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: ZFX_1
Assembly: GCA_963978555.1
Location: OZ021711.1:16363299-16370200[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.001 0.16 13.6 1.4 1 23 99 121 99 121 0.98

2 22 0.034 5.3 8.9 0.2 1 22 127 148 127 150 0.90

3 22 0.012 1.9 10.3 0.1 2 23 158 181 157 181 0.96

4 22 0.0039 0.6 11.8 0.1 2 23 188 209 187 209 0.97

5 22 0.00022 0.034 15.7 2.0 2 23 221 242 220 242 0.97

6 22 7.4e-05 0.011 17.2 1.4 1 23 267 289 267 289 0.97

7 22 6.4e-06 0.00098 20.6 0.5 1 23 295 317 295 317 0.99

8 22 2.9e-05 0.0044 18.5 0.7 1 23 323 346 323 346 0.96

9 22 0.0012 0.18 13.5 2.1 1 23 356 379 356 379 0.95

10 22 1.7e-05 0.0027 19.2 2.0 1 23 436 458 436 458 0.99

11 22 0.00012 0.019 16.5 2.7 1 23 464 487 464 487 0.97

12 22 0.063 9.7 8.0 0.3 2 23 493 514 492 514 0.97

13 22 2.9e-06 0.00045 21.6 3.1 1 23 576 598 576 598 0.98

14 22 1.7e-06 0.00026 22.4 1.7 1 23 604 626 604 626 0.98

15 22 1.8e-06 0.00028 22.3 3.7 1 23 632 654 632 654 0.97

16 22 0.00046 0.072 14.7 2.2 1 23 660 683 660 683 0.97

17 22 0.073 11 7.8 3.2 3 22 851 870 849 870 0.93

18 22 9e-05 0.014 17.0 2.7 1 23 944 966 944 966 0.98

19 22 2.6e-05 0.004 18.7 1.5 1 23 972 994 972 994 0.99

20 22 0.00029 0.045 15.4 3.9 1 23 1001 1023 1001 1023 0.97

21 22 0.043 6.6 8.5 0.2 1 19 1029 1047 1029 1049 0.93

22 22 0.00076 0.12 14.1 0.4 3 23 1229 1250 1228 1250 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.001	0.16	13.6	1.4	1	23	99	121	99	121	0.98
2	22	0.034	5.3	8.9	0.2	1	22	127	148	127	150	0.90
3	22	0.012	1.9	10.3	0.1	2	23	158	181	157	181	0.96
4	22	0.0039	0.6	11.8	0.1	2	23	188	209	187	209	0.97
5	22	0.00022	0.034	15.7	2.0	2	23	221	242	220	242	0.97
6	22	7.4e-05	0.011	17.2	1.4	1	23	267	289	267	289	0.97
7	22	6.4e-06	0.00098	20.6	0.5	1	23	295	317	295	317	0.99
8	22	2.9e-05	0.0044	18.5	0.7	1	23	323	346	323	346	0.96
9	22	0.0012	0.18	13.5	2.1	1	23	356	379	356	379	0.95
10	22	1.7e-05	0.0027	19.2	2.0	1	23	436	458	436	458	0.99
11	22	0.00012	0.019	16.5	2.7	1	23	464	487	464	487	0.97
12	22	0.063	9.7	8.0	0.3	2	23	493	514	492	514	0.97
13	22	2.9e-06	0.00045	21.6	3.1	1	23	576	598	576	598	0.98
14	22	1.7e-06	0.00026	22.4	1.7	1	23	604	626	604	626	0.98
15	22	1.8e-06	0.00028	22.3	3.7	1	23	632	654	632	654	0.97
16	22	0.00046	0.072	14.7	2.2	1	23	660	683	660	683	0.97
17	22	0.073	11	7.8	3.2	3	22	851	870	849	870	0.93
18	22	9e-05	0.014	17.0	2.7	1	23	944	966	944	966	0.98
19	22	2.6e-05	0.004	18.7	1.5	1	23	972	994	972	994	0.99
20	22	0.00029	0.045	15.4	3.9	1	23	1001	1023	1001	1023	0.97
21	22	0.043	6.6	8.5	0.2	1	19	1029	1047	1029	1049	0.93
22	22	0.00076	0.12	14.1	0.4	3	23	1229	1250	1228	1250	0.95

Sequence Information

Coding Sequence: atgctaACCTCAAATAATTTAAATGCTAGTGCGACAGAAACTTCTCTTTCCACTTATTATGTTATTCCTTTAGACACTGTCTTGAAATCTTCTGCTGATTATGGGCAAGGAACTGTTTATCTGATTAATAATGAAAACCAACAGcaAGACAATTATAATTTATCGGGGAATTCAGAAGTATGTAATAATAGCTCCATTCAACAGTTAGCAGAACAACAGTCAACAATCCAAGGAACTGAAAAACAGACTAATGAAATCTGTTTACTTCCTTTACCTGAACCCGCAGAATCCAAATATACTTGTCCCAAATGTGAGAGTACTTTCAAAACCATTAAAGAATACAAGGATCATTTAAAATGGCACAAATCCCAGAAAAACTTCAAATGTAGTCGATGTTCAATAGGTTATAATAATGAAGTTAATTTGAAGATACATAATGAATTGATTCACCCTACTGGAAACAACTTGAAGAGTTGTCCAATTTGTGGAGTTggcttaaaatttaaaagaacTGCAGGCTTGAGATCACATTTGATGATACACCAAACTGAGGAAGTACAAAGTTGTGAAGAGTGTGATGCTGAATTTGATAAAGAGgACGAGTATGTTCAACATATGACAACCCATTCCACAAAAAAGAATAATGACTTGCCTTCTTTAACTTGCTCACATTGTGAACTAGTATTTCAGACCAAAGATCAGCTAAGACTTCACATTTCTAAGCATATTAAAGCATTAAAGGGATTTaggaaacgaaaaaaaaatactagcTCTAAAAAGAAGTCATATACTCAAGTATACAATtgcaaaatttgtaaaaaaggaTTTTTCAAACAATCACTTTTACTTCGGCATGAAATGATACATAGTGGTGAAAAACCTTTCAAGTGTAGTATTTGTGATCAATCTTTCATTCAGAAGGGAACAATGCAAGTTCATCTATTAACACATACAGGAGTCAAACCATTTTCTTGTACTTTATGTCCTGCAAAATTCAACCAAAAAGGAAACCTGAGAGCTCACCTCAAAAATACCCATACCGTACCATATGGAGGTCAAAAGACCTTCAAATGTCCTCACTGTGATTGTATTTTCAAAACAATTGCTTCTCTGAATGGTCATGTCACTAAGGCTCATTTAAAATCGAACCAGAATGAGGAAAACATTATAAACAATGTGATGAAAAATTTGAAAGATCTCGAGGAACACAATTTGGATCAGTATGTAACTTTAACTGAATCATCAAGTGGagatgttgaaaaaaaatatactgtacAATTGAAGAAAATAGGGGATGTAAAGTGGTATAGGTGTATGCATTGCACTAAGATGTTGAAAAAACCGTCTGATCTTATTAAACATATTAGGGTACATACCAAAGAAAAACCTTTTGAgTGTAAAATATGTAATAAACAGTTTTCAATGAAACGTACATTAATTTCTCATACGAATAGAAAGCACCAGACGGAAAAATTGAAGTGTGGTGTGTGTGAAAATACATTTCTAACCACACAGTCTCTTATTGCTCAtataaaAAAGCACGGAAATAATGTTGAAAATGCTATACAAAATGATTCATTACAAGATCCACAAAATAAAACACCATCTGTTACTAATAAGATACTGAAGCAACCTCTTTTTCAAACTGTCTATGGTACATTAACATTTAAACCACCTAGATCTAAAATTTCTTGTACAGATAGTACCTCATCAATATCTAGACCCTTTCAATGTCCAACTTGTCATGCAAGATTCACAAGAAGATACGATCTCAACCGACATATTAAAGAACACGAAGGAGATAAAAAATTCAAGTGCACTATATGCCCTAAGTCATTTGTGACATCTTACAGATTGAGAGATCACATGAATTATCACAATAACGTCAAGAATTACGCTTGTGAACAGTGTAATAAGAGATTTTTTAATTCTTCGCATCTAAGGAGACACATGATAAGTCACAGTAACCTCAGACCATATACATGTCCGTATTGCTTCAAGAACTTTCAAACGCTCTCTCTGACTAGGCGACATATAAAGCTTATGCACAAAAAAGAAGCTTTGGCAGAGGCGGAAAAGAAAGAAGTAGAGAAAGAAGCAGTTGAGAGTTTACCTTTAGAAACAAGTGCAATTATTAACAATGTATCAAAACTCGAAATTGTCTcgCAAACTAGCCAACAAATTGGACTTACCGAAGACCCTTCTCTATCTACTAAAGTTATTAATACAGATACTGGAATAGAAAATACTGACTTAAATACAGGTCTTCAAACTTTTTACGTCAGTCTTGAAGATTTTCAGATGATAAATAACACTGTCGTTAACATTAATTCTATAAACGATATCATACCAACTCCCGAACACGCTCAAATCGACACACCGTtaaaagaaaatcaagaaaatccCATAATAGTGTATACAAATCCTTTTGAAAACACCGAAAAAACAGCAACGACAACTTCGGAAACAATGTTTGATGGCAATACAGTATTTCAAACATCCTCAGGTTTGAACGAAGTAAAAACAGTTTTCGACGATGCTAGTATAATATGTATGCACTGTAATCGAATGTATTCAAGTTTTATAAACTTTCAAAAACATACCTGTACCGGTAATCaagaagataataataaaaagggaATAGAAGAAGTGGAAAGAACAGAAGAAACTAATACCGGACGAATGAATGAATCTACTGACAGTAAacagttgaaaaataaatttttgtacaaaaaaacAATTTCCAAGGATTCGTCCTCTGGAAATCacaatgttaataacaaaatTGCTGATTTGAAACGCACAACGCCGTCTAGTACGTCTGGAAATTATGCCTGtgttttctgttcaaagttaTTTAAGAAACCATCTGATTTGGAAAGGCATCACCGAACTCACACTGGAGAAAAACCTTTCACTTGTGACATatgtaaaaaaaagttctcATTAAAAGCAACACTCAACGGCCATCTTAAAACTCATGATCCCAACCACAAACAATTTTGCTGCGATGTTTGCGATTGCGTGTATTCATCCAAAACTAGCTTAAAAGTCCACATGACTATACACACAGgcGCTATGCCTTACAAATGTACAAATTGCAACACGGACTTTCGAACGCTGGGCGCTAAAAAAGCGCACGAAGCCGCAGGTAACTGCGCAGCTCATAAAAAGAAAACTGAAAGAACGACGAAAGGTAAATTAgcagattttattaaaaatacgacGAATCTATCTTTTACCAATAATAACAGTAAGGAAGAGATACAAAACAATGTTAATGTTTTACCGGAATATGTTCCTTTTGAAAGTTTAGGTTTGGTGATGGATCCTAATAACCTGACAATTCAACCCCAAACTTTGGACCTTTCTTCCCAAATAGTAAGCTTGGACATACCTCCAACAATGTTATCAACAATTCCAGAAAATCAAATAACTGTCGATCCTTCCAACTTACTTCAACAACTTCGAATGTCCGACATGGTATTGACTACTAATGAATCGTCAGTACCGTCGTTGATTCTGGACGATGTTAGTTTTTTAGATTTGAATACACCAACTAATAACCTTCAAATAATTACCTTACCAGAAAATGATGGAACGGGAGTGACTATTAGTATAGAGGAGCCCAACAATGAAATAAGAATGGAGACCAAAACTAAAAAACCAAAACAAGCGGCTGCCTGTGACATTTGTTCTAAAGTGTTGGCTTCTAGAGATAGTTTGAAGAGACACAAAAAAAATGTCCATGGAGATAAACAGAAAGTTACTATACAGTGTGATATTAAAGACAATTCTTTCTGTGAGAGAAGCGATGTTTAA
Protein Sequence: MLTSNNLNASATETSLSTYYVIPLDTVLKSSADYGQGTVYLINNENQQQDNYNLSGNSEVCNNSSIQQLAEQQSTIQGTEKQTNEICLLPLPEPAESKYTCPKCESTFKTIKEYKDHLKWHKSQKNFKCSRCSIGYNNEVNLKIHNELIHPTGNNLKSCPICGVGLKFKRTAGLRSHLMIHQTEEVQSCEECDAEFDKEDEYVQHMTTHSTKKNNDLPSLTCSHCELVFQTKDQLRLHISKHIKALKGFRKRKKNTSSKKKSYTQVYNCKICKKGFFKQSLLLRHEMIHSGEKPFKCSICDQSFIQKGTMQVHLLTHTGVKPFSCTLCPAKFNQKGNLRAHLKNTHTVPYGGQKTFKCPHCDCIFKTIASLNGHVTKAHLKSNQNEENIINNVMKNLKDLEEHNLDQYVTLTESSSGDVEKKYTVQLKKIGDVKWYRCMHCTKMLKKPSDLIKHIRVHTKEKPFECKICNKQFSMKRTLISHTNRKHQTEKLKCGVCENTFLTTQSLIAHIKKHGNNVENAIQNDSLQDPQNKTPSVTNKILKQPLFQTVYGTLTFKPPRSKISCTDSTSSISRPFQCPTCHARFTRRYDLNRHIKEHEGDKKFKCTICPKSFVTSYRLRDHMNYHNNVKNYACEQCNKRFFNSSHLRRHMISHSNLRPYTCPYCFKNFQTLSLTRRHIKLMHKKEALAEAEKKEVEKEAVESLPLETSAIINNVSKLEIVSQTSQQIGLTEDPSLSTKVINTDTGIENTDLNTGLQTFYVSLEDFQMINNTVVNINSINDIIPTPEHAQIDTPLKENQENPIIVYTNPFENTEKTATTTSETMFDGNTVFQTSSGLNEVKTVFDDASIICMHCNRMYSSFINFQKHTCTGNQEDNNKKGIEEVERTEETNTGRMNESTDSKQLKNKFLYKKTISKDSSSGNHNVNNKIADLKRTTPSSTSGNYACVFCSKLFKKPSDLERHHRTHTGEKPFTCDICKKKFSLKATLNGHLKTHDPNHKQFCCDVCDCVYSSKTSLKVHMTIHTGAMPYKCTNCNTDFRTLGAKKAHEAAGNCAAHKKKTERTTKGKLADFIKNTTNLSFTNNNSKEEIQNNVNVLPEYVPFESLGLVMDPNNLTIQPQTLDLSSQIVSLDIPPTMLSTIPENQITVDPSNLLQQLRMSDMVLTTNESSVPSLILDDVSFLDLNTPTNNLQIITLPENDGTGVTISIEEPNNEIRMETKTKKPKQAAACDICSKVLASRDSLKRHKKNVHGDKQKVTIQCDIKDNSFCERSDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911288;
90% Identity: iTF_00911288;
80% Identity: -