Lcap006310.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_949126875.1
- Location
- OX421397.1:8860400-8868351[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8e-11 6.7e-08 34.3 0.0 2 45 88 132 87 155 0.81 2 3 5.4e-07 0.00045 22.0 0.0 47 103 191 246 179 249 0.82 3 3 7.2e-19 6.1e-16 60.2 0.1 5 108 273 375 270 377 0.93
Sequence Information
- Coding Sequence
- ATGGGTGATATATCTGCTGGAAATCGCACTTCATTCATATATAATTGGTGTTCTTGCCGAATACTTAGCACATTTTTACATTTTGCAAGAGTGTCTAATGTAAAAGACCTCAAAGATCCACTTTTTTTGgagcaaaaaacacaaaacggTTTTGAATCAGACATTATTCACACAAGTAGGCCTGATCACgcACCTTTCAAACCCCCTCCTCCTTTAAAACCTGAAGTCCACACATCCCCAGGATCTTATGGTGACCACTTGCAGCATCTTTGGTTAAGCAGGGCTCACACCGATGTCGTATTAGTTGTAGGCTCCATGGGATTCCCCGCACATCGTTTCATTTTGGCAGCATGCAGTAGAGCTTTCTATAGACTTCTTACAGTCGATTTGTTGGCACGTAGCACAAGCGATTCCAGCATGGTAAGTTCCCTGGGTGATTTTGCTGACGAAACCGAATGTCTAGTTAGAACTGAACAGAAAACGTGCAAAAGAAGAGCTAGTTGTCAAGCTTTACCTACTGCCAGAGAACTAGACCATCCGGCTTTTCAGTGTATTAGAAACGTTCAACCGGAAGGACAGACCGTCGTGACCTTGAGTAAACTAGTGACGCCCGATGCTATGCATCAATGTCTTCAGTTCGCTTATACCGGCACGGTGGACCGGAGTGCTTTGAATCTACGGGAAACTAGAGAAGCGGCCGAATTTCTCGAACTGCCACAGCTGTTGATTTTGCTTACGAAACACCCCTTCGTCGCACCAGATCCTCCCGACGAAAACTACCAGATTTTTCTCAAAAGGAGATTACAGGACATTTGCCTGGATCAAGGACTTTTCGCCGACGTCATCTTCGAATTAGACGACGGCGCTTGTACTGCTCACAAAGCCATGCTGGCCGCTAGATGTGATGTCATGAAAGCGATGTTCAGAGGAGATTTTAGAGAGAGCCAAGCAAAAGTGaTTGAATTTCCAGGTGTGAGAGAATATACGTTCCACAAATTACTCTGTTTTTTGTACACGGACGAAATACCGGAGGTGTCTGCAGTGAGATGCATCAATTTACTTGAATTAGCGAACAGATTGTGCCTACCGAGATTGGTGAATTTAGTGGAAAAGAGAGTAATAGAGGATTTGGAAACGTTACAACCGTCTGAAGCGATCGAACAATGTTTAAGACTGTTAGAACCCGTTAAGttacACAACGGACATCAATTGGCAGATTGGTGCATGAATCATCTATGCATCAACTATAACAAACTATGTAGGATGTCACCGCGTAGCCTACGTCTTTTACATCCCGACAACCAGGCTTATCTGATAGAACATCGTTGGCCACCGGTTTGGTATCTTAAAGACTACGATTACTATCAGAAATGTCTGGCGGAGCGCGACAAAGAACTGAAACCGGCCAGTAATACGGGTTCGAGTTGTCTGTGTTTTTCTCGTAAATCCGAGTCCGACCCAGCGTTATCATCAAGCCAACTCTGA
- Protein Sequence
- MGDISAGNRTSFIYNWCSCRILSTFLHFARVSNVKDLKDPLFLEQKTQNGFESDIIHTSRPDHAPFKPPPPLKPEVHTSPGSYGDHLQHLWLSRAHTDVVLVVGSMGFPAHRFILAACSRAFYRLLTVDLLARSTSDSSMVSSLGDFADETECLVRTEQKTCKRRASCQALPTARELDHPAFQCIRNVQPEGQTVVTLSKLVTPDAMHQCLQFAYTGTVDRSALNLRETREAAEFLELPQLLILLTKHPFVAPDPPDENYQIFLKRRLQDICLDQGLFADVIFELDDGACTAHKAMLAARCDVMKAMFRGDFRESQAKVIEFPGVREYTFHKLLCFLYTDEIPEVSAVRCINLLELANRLCLPRLVNLVEKRVIEDLETLQPSEAIEQCLRLLEPVKLHNGHQLADWCMNHLCINYNKLCRMSPRSLRLLHPDNQAYLIEHRWPPVWYLKDYDYYQKCLAERDKELKPASNTGSSCLCFSRKSESDPALSSSQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00329748;
- 80% Identity
- -