Lcap025503.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421403.1:849864-851675[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-11 1.6e-08 35.8 0.0 2 42 18 58 17 60 0.93
Sequence Information
- Coding Sequence
- atgccaaacaagtacataagaaAATCTGTACAAACACGTGGTACGTGGTCACAAGATGATCTGTCACAGGCAATCAAAAGTGTTGTTGATGGAAATAGTTCTGTTCGTCGAGCCTCTATTGAATTCAGCATACCACGTAAGACCTTAGAACGTAGAATTAAAACCGGAAATTCTCAAAAGGGAAGTATGGGCCCTAGCAGCGTCTTTGGAAGAGATCATGAAGATCGACTATCACGACATGTTCTGTGTATGCAAAAACGAGGTTTTCCATTAACCAGAGACGATATCAGGACCATCGCTTATCAATTCGCAGAACAGCTAAGAATTAAACACaagtttaataatgaaattggAAAAGCTGGTTACGACTGGCTTACTTTATTTCTAAGCCGTCATCCAGAAATTAGTATTCGTAAATCGGAAGGTGTCTCCATAGCTAGAGCAACAGCTATGAACCGAAAGGAAGTGGGagattattttgatttacttgAAACAACTATGGAACAGAACTCTTTATTTGATAAACCTGCAAACGTATTTAATATCGATGAAACGGGTCTCCAACTCAACAGTAGACCAGGCGAAGTGCTTGCCAGAAAGGGTTCCAAGGCTGTGTCGACGGTAACATCCACCGAAAAGGGAGAAACAGTCAGCTTGGTAGTGTGTTGCAATGCTGAGGGTAACTTTTTACCGCCTGCGGTTATAATGaagggaaaaaataaaaaacaagagtGGGAGGATGATCTGCCACCGGGATCTATGTTGTTTATGGCACAAAAATCTGCCTACATCAACGCCACCATTTTTCTTCAGTGGATGCGTGAACATTTTGTACCTAGAAAACCTCAAGGAAAAGTCCTATTAGTGCTTGACGGACATGCTTCTCATGTAAATTCAGTCGAAATGTTGGAGTTTGCAGAATCTAATGACATCATCATATTATGCTTGCCCAGCCATACCACACATTATCTTCAGCCTTTGGACAGAAGCTTTTTTAAGTCGTTAAAAGCGCATTTTTATGAATCGTGTCGTTTATGGCTCAGAAATCATGTTGGACGGCGTATTACCAGATACCAATTTGGTGAGCTTCTGAGTGTAAGTTGGGGAAAGGCGGCTACTATACAAAATGGTTCGTCTGGCTTTAAAGCGACGGGAATTCTGCCTTTCAATCGCAATATTATACCGGATTATGCTTTTTGTGTTGAAAAAACCTCTCCGGCAAAAACTGTAAACTCATCGCCTCAAAAACCAACAGAGATTACAAACCAACCAAACGGTAACTTGGAAGCACAGCCATCAACTTCTAAAaccataaataacaaaataactCCCTCGAAAATATTGTCCGACTTGTCGCCATCTGCtccagaaaaaataaatgaagttAGAAAACGAGCTAAGCAAGTAGCGACTATTTTAACTTCTCCAGAACATCTGAACAATCGCAAAGAAAAAGACAGAAAGtccaaagaaaaagaaaaaaaggctGAAGACAAAAAGGCTGCAAAGAAAGATAAAAAGGTATTCAAGGCAATAAAGAGAAGAAAAAAGGAGTTTTCAAGCAGTGAAGAAGATGAAGAAGTAATTTTAGAAAGCGACGAAAGTGAAACCGAGGATTTTGGTGAAAATGTGTGCGTCGGGTGTGGGGAAGACTATACACAGACAAAAAGGAAGGTAGACTGGATTAAATGCATACACTGTAACATGTGGTTACACGAAGACTGCACGTCTTACGGCGACTTCTGTCAAAAGTGTGGAAAACTTGACAAAAAGGGCAAAAAACACTCAATCACTGAGCATacctttaattaa
- Protein Sequence
- MPNKYIRKSVQTRGTWSQDDLSQAIKSVVDGNSSVRRASIEFSIPRKTLERRIKTGNSQKGSMGPSSVFGRDHEDRLSRHVLCMQKRGFPLTRDDIRTIAYQFAEQLRIKHKFNNEIGKAGYDWLTLFLSRHPEISIRKSEGVSIARATAMNRKEVGDYFDLLETTMEQNSLFDKPANVFNIDETGLQLNSRPGEVLARKGSKAVSTVTSTEKGETVSLVVCCNAEGNFLPPAVIMKGKNKKQEWEDDLPPGSMLFMAQKSAYINATIFLQWMREHFVPRKPQGKVLLVLDGHASHVNSVEMLEFAESNDIIILCLPSHTTHYLQPLDRSFFKSLKAHFYESCRLWLRNHVGRRITRYQFGELLSVSWGKAATIQNGSSGFKATGILPFNRNIIPDYAFCVEKTSPAKTVNSSPQKPTEITNQPNGNLEAQPSTSKTINNKITPSKILSDLSPSAPEKINEVRKRAKQVATILTSPEHLNNRKEKDRKSKEKEKKAEDKKAAKKDKKVFKAIKRRKKEFSSSEEDEEVILESDESETEDFGENVCVGCGEDYTQTKRKVDWIKCIHCNMWLHEDCTSYGDFCQKCGKLDKKGKKHSITEHTFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735406;
- 90% Identity
- iTF_00735426; iTF_00735406; iTF_00910479;
- 80% Identity
- -