Gnym003771.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021704.1:24788384-24793052[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.079 35 5.4 0.0 23 43 35 55 34 56 0.92 2 2 2.5e-11 1.1e-08 35.8 0.0 2 42 115 155 114 157 0.93
Sequence Information
- Coding Sequence
- ATGACTCCATATGCAGAATCTATAGATGGTTTTCGTTGGAGATGTAATGGACACATAAGGAAGAGCAAGAAGAAACCTGTAGCTTGCAAAAAAGTATCAGTAGCAGACCGCTTTGACGTCTCATTGAGTACAGCCTGGGAGTATTTCCAAAGAATTGTTAGTGTTCTGGTTCAGGTTTCTGGTCAATATATCAAATGGCCTGAAGTAATTGATGGTGTAAAGAGAGGCTTCAAGAAAAGGGGAGGTATTGATGGTGGTATAGGAGCTATTGATGGAACACATATTCCTATTATGCCGAACAAGTACATGAGAAAATCTGTACAAACACGTGGTACGTGGTCACAAGATGATCTGTCACACGCAATCAAAAGTGTTGTTGATGGAAATAGTTCTGTTCGTCGAGCCTCTATTGAATTCAACATACCACGTAAGACCTTAGAACGTAGAATTAAAACCGGAAATTCTCAAAAGGGAAGTATGGGCCCTAGCAGCGTCTTTGGAAGAGATCATGAAGATCGACTATCACGACATGTTCTGTGTATGCAAAAACGAGGTTTTCCATTAACCAGAGACGACATCAGGACCATCGCTTATCAATTCGCAGAAAAGCTAAGAATTAAATACAAGTTTAATAATGAAATTGGAAAAGCTGGTTACGACTGGCTTACTTTGTTTCTAAGCCGTCATCCAGAAATTAGTATTCGTAAATCAGAAGGTGTCTCCATAGCTAGAGCAACAGCTATGAACCGAAAGGAAGTGGGagattattttgatttacttgAAACAACTATGGAACAGAACTCTTTATTTGATAAACCTGCAAACGTATTTAATATCGATGGAACGGGTCTCCAACTCAACAGTAGACCAGGCGAAGTGCTTGCCAGAAAGGGGTCCAAGGCTGTGTCGACGGTAACATCCACCGAAAAGGGAGAAACAGTCAGCTTGGTAGTGTGTTGCAATGCTGAGGGTAACTTTTTACCGCCTGCGGTTATAATGaagggaaaaaataaaaaacaagaatggGAGGATGATCTGCCACCGGGATCTATGTTGTTTATGGCACAAAAATCTGCCTACATCAACGCCACCATTTTTCTTCAGTGGATGCGTGAACATTTTGTACCTAGAAAACCTCAAGGAAAAGTCCTATTAGTGCTTGACGGACATGCTTCTCATGTAAATTCAGTCGAAATGTTGGAGTTTGCAGAATCTAATGACATCATCATATTATGCTTGCCCAGCCATACCACACATTATCTCCAGCCTTTGGACAGAAGCTTTTCTAAGTCGTTAAAAGCGCATTTTTATGAATCGTGTCGTTTATGGCTCAGAAATCATGTTGGACGGCGTATTACCAGATACCAATTTGGTGAGCTTCTGAGTGTAAGTTGGGGAAAGGCGGCTACTATACAAAATGGTTCGTCTGGCTTTAAAGCGACGGGAATTCTGCCTTTCAATCGCAATATTATACCGGATTATGCTTTTTGTGTTGAAAAAACCTCTCCGGCAAAAACTGTAAACTCATCGCCTCAAAAACCAACAGAGATTACAAACCAACCAAACGGTAACTTGGAAGCACAGCCATCAACTTCTAAAAccataaataacaaaataactCCCTCGAAAATATTGTCCGACTTGTCGCCATCTGCTCCAGAAGAAATAAATGAAGTTAGAAAACGAGCTAAGCAAGTAGCGACTATTTTAACTTCTCCAGAACATCTGAACAATCGCAAAGAGAAAGACAGAAAGtccaaagaaaaagaaaaaaaggctGAAGACAAAAATGCTGCAAAGAAAGATAAAAAGGTATTCAAGGCAATAAAGAGAAGAAAAAAGGAGTTTTCAAGCAGTGAAGAAGATGAAGAAGTAATTTTAGAAAGTGACGAAAGTGAAACCGAGGATTTTGGTGAAAATGTGTGCGTCGGGTGTGGGGAAGACTATACACAGACAAAAAGTAAGGTAGACTGGATTAAATGCATACACTGTAACATGTGGTTACACGAAGACTGCACGTCTTACGGCGACTTCTGTCAAATGTGTGGAAAACTTGACAAAAAGGGCAAAAAACACTCAGTCACTGAGCATaccttaaattaa
- Protein Sequence
- MTPYAESIDGFRWRCNGHIRKSKKKPVACKKVSVADRFDVSLSTAWEYFQRIVSVLVQVSGQYIKWPEVIDGVKRGFKKRGGIDGGIGAIDGTHIPIMPNKYMRKSVQTRGTWSQDDLSHAIKSVVDGNSSVRRASIEFNIPRKTLERRIKTGNSQKGSMGPSSVFGRDHEDRLSRHVLCMQKRGFPLTRDDIRTIAYQFAEKLRIKYKFNNEIGKAGYDWLTLFLSRHPEISIRKSEGVSIARATAMNRKEVGDYFDLLETTMEQNSLFDKPANVFNIDGTGLQLNSRPGEVLARKGSKAVSTVTSTEKGETVSLVVCCNAEGNFLPPAVIMKGKNKKQEWEDDLPPGSMLFMAQKSAYINATIFLQWMREHFVPRKPQGKVLLVLDGHASHVNSVEMLEFAESNDIIILCLPSHTTHYLQPLDRSFSKSLKAHFYESCRLWLRNHVGRRITRYQFGELLSVSWGKAATIQNGSSGFKATGILPFNRNIIPDYAFCVEKTSPAKTVNSSPQKPTEITNQPNGNLEAQPSTSKTINNKITPSKILSDLSPSAPEEINEVRKRAKQVATILTSPEHLNNRKEKDRKSKEKEKKAEDKNAAKKDKKVFKAIKRRKKEFSSSEEDEEVILESDESETEDFGENVCVGCGEDYTQTKSKVDWIKCIHCNMWLHEDCTSYGDFCQMCGKLDKKGKKHSVTEHTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735426; iTF_00330473; iTF_00910479; iTF_00910481;
- 90% Identity
- iTF_00910481;
- 80% Identity
- -