Lcap042697.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- -
- Assembly
- GCA_949126875.1
- Location
- OX421408.1:24308324-24310330[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-12 5.9e-10 40.3 0.0 2 38 16 52 15 57 0.94
Sequence Information
- Coding Sequence
- ATGGTTCGCACGTACAAAAGAAAGACTAATGCTGGAGATTGGTCTCAAGAAAAAATGAAAGAGGCTGTTAATAAGGTCCAGAACAAAGAACTGACCATACGTAAGGCTGCTGAGATTTTTGAAGTACCGTTCACGAGCTTACAGAGAAGAGTTTCTTTGGCCAGGGGTGTTGTTAAGCGTCGAGGTGGACAGTCAACTTTGGATGAGAACGCAGAAAAGAAGTTAGCTGAGCGGCTATTGAACTTGGCAAGTCGTGGCTTCGGAATTACACCCAAAGCGGTACGTAAGTACGCGTTTGAATTTGCAGaacgtcaaaacatcaaacacaaatttgacagaagtgcTGGTATGGCTGGCCAGGACTGGTTTCATCGTTTTATGCAAAGAAATAAAGAATTAACTATTCGGAAGCCGGAGGGTCTGTCAAGAGCAAGGATTGACGGTATGAAGAAGGAAAAAGTGGCAGAATTCTTTAATACTTTGGAAACAGTAGTCAATAACAACAATTTAAGAGGAAGACCTGAATGTGTATACAATGTTGATGAAACGGGGATGCCGCTTAGTAACCGCCCACCCAACATTATAGCCCAAAAAGGTGCTAAAGATGTTGTCAGCATGACCAGTGTTGAAAGAGGTGAAAATGTAACCGTTCTAGCCTGTATGAACGCAGCAGGACAGTACATACCTCCATTTGTTTTATTCAAAGGTGTGCGCAAACGTGACGATTTTCTCCTAGGTATGCCACCTGGTACTGAAATTGCCATGACAGAAAAGGGCTGGATCACTGAAGAGGCTTTTATGCTGTGGCTGCAACATTTCAATCGGTATCGGACCTCAGGAAAAGTAGTTTTAATTTTGGATGGCCACGCGTCTCACACTAGCTACTCAGTGGTAGACTTGTGCGATTCTTTCGAAATTGAACTTGTGCTTCTTCCTCCACACACATCGCATGCCCTGCAACCGCTCGATGTATCGTTTTTCAAACCACTTAAAACTTATTATCATCAACAAGCTACCGCATGGCAACATTCACATCCCAACCAAGGAATTACAAAAGTCGCTTTCGGAGCACTTTTGCAACGGGCTTGGAATCAGGCTGCCACTGTTGGGAATGCTACAAAAGGTTTCGAAAAGACTGGGATATTTCCTCTAAACGCCAATGCAATACCTGAACACAAGTTCATCGGTGATCAAGTGTCGGACATTGTGGAGTCCCAAGTCCAGTCCCCAAGTTCCCAACAAATGCAGCTACAACTGCAAGCCAAAAATACACCACCAGTAACTGATATAGTGTCATCTGCAAGTTCCACCTGTGCGGATGAAGAAAGAAAGAAGATAAAGAATAAAGCAACGCCTGggataaaaattaaaagttcatCAGCAAAACAGAGAGAGCCTCAAGTGCCCCAAGTCCAATCCACGAGTTCCCAACAGATGCAGCTACACGATCAATCCTCAAATGCAGAACAAGTGCAGTCAAAAATAAAGATACAAGTCCAAACCGCTAATACAAAACCACTTGATGTAGTGCCATCCACAAGTTCGCAACAACCTGACGAAGCCCAGCCTCCTAACTGTGCAGAAATAATCAAAGAAATTCTTCCATCACCTTTAAAGTCACCTACAGCTCTTAAAAGAATTCGTAAAGTTTTTAAACCAGTGTTGCATTTAACATCACCTCAGAGTAAGGCTACTCTTCTCGAAAAAgagacaaacaaaaaatttaaggtAAACAAGGAAAACAAGGAAAATAAGGAAAAGGCAGAGGGCAAAGAAAATAGTACTATGAAGAAGATGAAGAATAAAGAAAAGCCTATGATAAAAATTAAGAGCTCATCTGCAAAACAGAGAGAGTGGCACTGCATTTACTGTTCCGAAATGTTCATTCATCCACCATCAGAGGATTGGATCCAGTGCAATGTCTGCGAAGAATGGTGCCACGAAAAATGTACTGATATGGGGGGGAAAAAAGGATACTATATATGTGAATTATGTGCCGATGTTTAA
- Protein Sequence
- MVRTYKRKTNAGDWSQEKMKEAVNKVQNKELTIRKAAEIFEVPFTSLQRRVSLARGVVKRRGGQSTLDENAEKKLAERLLNLASRGFGITPKAVRKYAFEFAERQNIKHKFDRSAGMAGQDWFHRFMQRNKELTIRKPEGLSRARIDGMKKEKVAEFFNTLETVVNNNNLRGRPECVYNVDETGMPLSNRPPNIIAQKGAKDVVSMTSVERGENVTVLACMNAAGQYIPPFVLFKGVRKRDDFLLGMPPGTEIAMTEKGWITEEAFMLWLQHFNRYRTSGKVVLILDGHASHTSYSVVDLCDSFEIELVLLPPHTSHALQPLDVSFFKPLKTYYHQQATAWQHSHPNQGITKVAFGALLQRAWNQAATVGNATKGFEKTGIFPLNANAIPEHKFIGDQVSDIVESQVQSPSSQQMQLQLQAKNTPPVTDIVSSASSTCADEERKKIKNKATPGIKIKSSSAKQREPQVPQVQSTSSQQMQLHDQSSNAEQVQSKIKIQVQTANTKPLDVVPSTSSQQPDEAQPPNCAEIIKEILPSPLKSPTALKRIRKVFKPVLHLTSPQSKATLLEKETNKKFKVNKENKENKEKAEGKENSTMKKMKNKEKPMIKIKSSSAKQREWHCIYCSEMFIHPPSEDWIQCNVCEEWCHEKCTDMGGKKGYYICELCADV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178365;
- 90% Identity
- -
- 80% Identity
- -