Basic Information

Insect: Lochmaea capreae
Gene Symbol: rfx7.L
Assembly: GCA_949126875.1
Location: OX421398.1:25269242-25278575[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 8e-34 1.2e-29 104.4 0.2 3 77 122 196 120 198 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	8e-34	1.2e-29	104.4	0.2	3	77	122	196	120	198	0.97

Sequence Information

Coding Sequence: ATGGATAATGAAACTTGGACTGCTAAATATCAATCTGAAACGACAGATCTTCAAAGAGTAAAAAATCGCTTAAACAATGGAATCACGAAAAAAAATGGAGAAGACGGTGAATGTTCTAATAAGTCTGAAAAAGATGATATACAGGGCTTTGTTAAAAATGAGCCTTGCACAGATGCAGGCTCCGTTAACATCACAATTAGTGACAGAGCTAAGCAAACAATACAGTCAATTTTGGAACAAATAAAGCCCCTCTCTCAAGTGGAAAAGTTTCTTCTTTTCCTAAAATTACCATCAGAGGTAACGAATGCAGTGGATCCATTTAGACAGCCCTTAAATCCTCTTGGTAGTAGATCAGAGATCACAAGAACAATATCTTGGATAAAAACTCATTTAGAAGAAGATCCTGATATATCTTTACCAAAGCAAGAAGTTTACAATGAGTATCATAATTACTGTGCAAACAACAGCATTAAACCTTTATCACAAGCCGATTTCGGAAAAGTTATGAAACAGGTATATCCCAAAGTAAGAGCCAGACGACTAGGGACAAGAGGAAATTCAAGATATTGTTATTCCGGCTTAAGAAGGTATGCAAAATTAAAACCACCACTTCTACCAGATTTGATGGATAAACCAATGtccACAGAAGCTCCATTCAGTCAAACAAGTATAGCTTCTGCTGCGTGGTTGATTGTAAAAGAATGGTCAGAAAAGAAATTGAATCAACATTTCGCCTCCATTCAATCTTTAGCATACCATCTTATTATAAATCATCTAGTTGGTACAACATCAGAAGCTGCATCCAaaattacgtctgctgggattTATTCGTTAAAAAATGAAGGCAATGTGAAAGAGTCGAAGCATAGAGAAATGCAACTTCAACTTCAAAGAAAGATTCAACAAAAGAAtgaaggaaaggaaaggaaaaagAGAACGCAGTCACCGAAATCGGAACAAAAACCCAGTATAAAAAAATCCCGTTCACAAAGCGTACCAGCTCAAAATGTTACTAACAATTTTTCTCCAACAACGACCAATGGCGGTGTAAACTTAGCAAGTGGAGAATGCAGCACAGCCAGCAGTAGTAGCAGCAGCACGAGCCCCACTCAGGCTAAAATTATCTGTGATAAATCACTAGATTTCACTCAGCTACCAGTGTTACCTGACTTTAACAGTTTCCAAAAGCCGGCAGTAGATGGCAGCGTTGTGGGCCCTAATGGACAGGATTCGCAGATGGTGATAACGACCAATAAGGTTCGAATATCGAAACTTCATCCGTCACCGAACAATCAGTCTTGTAATGTTATGACCACATCAGGTATAAAGCAAAAGTACAAATCACTCCGGCCCAGACTGCAACCTTGTGATATTGCGTCGTACAACCCACAGCCACAGCCAGAGGCCGAGGCTGAACATAGATCTCAACATAATGTACATGATATAGCTAGAATTAAGGAAAGCAACAGTGATGAAGAATGTGATTTTCCCCTCACCAGAGAAAGACTAAACAGCATCAGCAACGTCTCCAAAGATGCAATGGACGAGTATTTGGGTACAAATAACAGCCAACATGAAGAAGAATTATCCAAATACTTCAGTAACAATAACATAACAGAATCGAAAGAATCTGAAGATACGTCAAAATTATCGACACTTAGACAGCTGCTCGTGCAAAATATCGTAGACACTAAACCTACATTGGAAAACAGGGTAATGGAACATAGAATTGTCCCTTACGCTAACGCTAGTttgaatcatctgccagtacaAAACAACCTCTCCTACATGCATTCGCTGACTCAACAGGAACCGCTCAGTACGTCGGTTAATGTAAAAAGAAGAGTTAGCTTTGAAACGCCGGCGTCGGAGGATTCCGTGCCGCCGAGTCCGAATACTAGAAGGAAAAATTTCAGTTTTACTCCGATATCGCCGGGACCTCAATCGCCGAGCGGTATGCATTCGAAATGCTCCAGTACATCCGCAAGTCCTTTCGTTAGTCCTAGAAATACTCCAGTTCTGAGGAACAAACCGGCGCACCAGACGACGAGTATTCTAAAAACCGAAACGAGGAAAACTTTGAGAGTTAAACGGGAAATTGATCTTACATTGGAAATTCCCAGTGAAAATCAACCGAGTTTGAATTTATTACCGATGTCGGCTCCGGTAAGTCCGATGTTGAACACGAAAAAATCCGTattgcaaaaattattaaactccACCAGCAAAGTACCGTACAATCCCAGCTACACAGCCGTTACAAACATCGACGTTCAACCGGATAGCTCGTTGGAGGTGAATCAATTTTTAACTTCGAACGTCGAATCTAATTTGGAAGGCTACAGATCCCGATCGGTGCCTTTACACAATATGATCAATCCCATCGATAacgtttttgttaataatacgAACAACGATTTTTCCGAAATCGATCCGATACCGGACTCGGAAAGCGACAACGTTAAGCGTATTCTACATTCTCTAGAAGATCCTCCGGTCGATATGGTCATCACGCCCAACAACGCCAATTTAAGAGAATTCGGTTTTCAGTTGTTCAACAGTTCATTGGACGTCGGTAATTTTCCACAACAAGAATTCGGAAATCAAAGATTGGCCCGTTCTCAAAGCATCGGCGGTGAAGTTACTCTCCCGCAGCAAATTTTACCGTCTAGGTCTGTACCGAATACTCCTCTACCCTTTATTAAACCGCAGAAAATTAATTACAGCAACTCTAGGTCGTATCCTTCGACGCCGTTAAACAATGACGAAACGTTTACGTACAACATCAACGGAGATTGTCTTTTGAATGGTCAACCGATTAGAAACGATGACGTTACCGATAGTTTGGGTTACCTTCCGAGTTTTGAGATAAATAGGGATGGTACAACGGAACAATTACCCCACGAAAAGGAATTTAATATTGCTACCGATTTCGATATTGTCGAAAATGAGAGTCAGTTGATCAATACTGGATTGATCGAGGCCAATTTTATCGATAATATCGAATGA
Protein Sequence: MDNETWTAKYQSETTDLQRVKNRLNNGITKKNGEDGECSNKSEKDDIQGFVKNEPCTDAGSVNITISDRAKQTIQSILEQIKPLSQVEKFLLFLKLPSEVTNAVDPFRQPLNPLGSRSEITRTISWIKTHLEEDPDISLPKQEVYNEYHNYCANNSIKPLSQADFGKVMKQVYPKVRARRLGTRGNSRYCYSGLRRYAKLKPPLLPDLMDKPMSTEAPFSQTSIASAAWLIVKEWSEKKLNQHFASIQSLAYHLIINHLVGTTSEAASKITSAGIYSLKNEGNVKESKHREMQLQLQRKIQQKNEGKERKKRTQSPKSEQKPSIKKSRSQSVPAQNVTNNFSPTTTNGGVNLASGECSTASSSSSSTSPTQAKIICDKSLDFTQLPVLPDFNSFQKPAVDGSVVGPNGQDSQMVITTNKVRISKLHPSPNNQSCNVMTTSGIKQKYKSLRPRLQPCDIASYNPQPQPEAEAEHRSQHNVHDIARIKESNSDEECDFPLTRERLNSISNVSKDAMDEYLGTNNSQHEEELSKYFSNNNITESKESEDTSKLSTLRQLLVQNIVDTKPTLENRVMEHRIVPYANASLNHLPVQNNLSYMHSLTQQEPLSTSVNVKRRVSFETPASEDSVPPSPNTRRKNFSFTPISPGPQSPSGMHSKCSSTSASPFVSPRNTPVLRNKPAHQTTSILKTETRKTLRVKREIDLTLEIPSENQPSLNLLPMSAPVSPMLNTKKSVLQKLLNSTSKVPYNPSYTAVTNIDVQPDSSLEVNQFLTSNVESNLEGYRSRSVPLHNMINPIDNVFVNNTNNDFSEIDPIPDSESDNVKRILHSLEDPPVDMVITPNNANLREFGFQLFNSSLDVGNFPQQEFGNQRLARSQSIGGEVTLPQQILPSRSVPNTPLPFIKPQKINYSNSRSYPSTPLNNDETFTYNINGDCLLNGQPIRNDDVTDSLGYLPSFEINRDGTTEQLPHEKEFNIATDFDIVENESQLINTGLIEANFIDNIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00458607;
90% Identity: iTF_00735222;
80% Identity: -