Lhal010867.2
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000026.1:1252927-1261502[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0042 0.25 12.0 1.5 3 23 686 707 685 707 0.96 2 24 4.3 2.5e+02 2.6 0.1 6 23 1069 1088 1069 1088 0.90 3 24 1.2 70 4.3 0.1 1 21 1093 1113 1093 1114 0.95 4 24 2.5 1.5e+02 3.3 0.4 1 23 1154 1177 1154 1177 0.93 5 24 0.0011 0.065 13.9 0.7 3 22 1188 1207 1188 1207 0.97 6 24 0.42 25 5.8 0.5 2 23 1215 1237 1214 1237 0.93 7 24 0.061 3.6 8.4 0.8 3 23 1256 1277 1254 1277 0.92 8 24 0.0033 0.19 12.4 0.4 2 23 1283 1305 1282 1305 0.91 9 24 0.13 7.8 7.3 0.0 1 23 1330 1353 1330 1353 0.90 10 24 0.02 1.2 9.9 3.4 1 23 1358 1380 1358 1380 0.97 11 24 0.017 1 10.1 0.1 1 23 1386 1409 1386 1409 0.95 12 24 0.0003 0.017 15.7 0.8 1 23 1422 1444 1422 1444 0.97 13 24 0.00019 0.011 16.3 1.8 1 23 1497 1520 1497 1520 0.97 14 24 0.002 0.12 13.1 0.8 1 23 1580 1603 1580 1603 0.96 15 24 0.0021 0.13 13.0 1.5 2 23 1629 1651 1628 1651 0.95 16 24 0.0045 0.27 11.9 0.1 2 23 1657 1679 1656 1679 0.94 17 24 0.0069 0.41 11.4 0.3 1 21 1723 1743 1723 1744 0.95 18 24 0.0013 0.076 13.7 0.6 1 23 1754 1776 1754 1776 0.93 19 24 0.00012 0.0069 16.9 0.3 2 23 1862 1884 1862 1884 0.93 20 24 3.5e-07 2.1e-05 24.9 1.4 3 23 1891 1911 1890 1911 0.98 21 24 0.13 7.7 7.3 0.5 1 23 1930 1952 1930 1953 0.94 22 24 0.27 16 6.4 0.0 1 23 1977 1999 1977 1999 0.97 23 24 0.031 1.8 9.3 0.6 1 23 2005 2028 2005 2028 0.95 24 24 0.00039 0.023 15.3 0.4 1 23 2036 2059 2036 2059 0.96
Sequence Information
- Coding Sequence
- ATGACTGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCACGAGGCGATTTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTTGGAACCTCCCATCCTCGCTTCGAGAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGATCTGCCGACGAATGTCTGCAGGAAATGCATGGACAATGTCAACAACTGGCATTTATTCAAGACTGTCTGTGTAAAAACACAAAACAAACTACAGTCTCTCATAAAGGATGGAAGCCTACTAGAAGAGGTGCAAGTCAAAAATGAACCATCTGAGGAGACATATGACGATGGAGTGGTCATTGATGGCTCATACCCTGAAGCTGAGAATGCTGGCTCCTCAAGTAAACTCCAGCCAGAAGGGCCTCCGATTCTGGCTTCTTTGGGACTTACACCAAGAAGTGATAAGAAATATGTGGATCCACGAATGGATTGGCATCGAGTCCATGCTATATTGAACTTGGTACAAGAGAAAGATGCCATTGATTCGCTCCAATCCTTGGAAGAGAGTGATATCTCACACCGTTCTGACCACGAGTCTGAGACTGATACGGAACTTCTATCTGAAATTGATGACACTTATGTTACCCATATAAAGGGCTATATTTGTAAAAATAAAACCAACCTTCTCAAAAATCCAGCTACGAAAGTTAAAAATCGTCCAAAACTGAAAAAACGGAAAATGAATGAGCATAACTATTGTGGCTATCCGAAAAACGCGTGGCAACTGCTCTTTACAGATGATCTACTCGACATCATCGTCTCATCAACTAACGAGAACATTCTCAGACACGGTAAAGGCTTCTCGGGGTGCACTAATGTCGGTGAAGTTAAAACTCTAATCGGAATTTTGTATTTGAACGGTATAATGAGGCCGACACATCAGAAATGCGATGACCTCTGGCACCTAGAATGCGGCGTCCCGGCCATAATGAACGCAATGACAAAGGAACGTTTCAACTTTCTCATTCAAAACATCTGTTTCTACAGCATGGAAGACGATGGTACCATAATGCAGCTCGACTCAATGAAACGTATGCGTAAAGTGTTCGAAATTTTTGCCATGAATTGCAGAACAACCTTTGACGTGGAGAGTTCAGCCGTCGTTGATGAGATCATTGTGCCAGTTTATGGACCTTGTCCGTTCCGATACGAGATTGATAAGAAACCGCTGAATCGTGGAATAAAAGTAGTTATGCTAGTCGATCCGAATAATTTCTACGTAAGCAATCTAGACGTCATAACTGATCCTTTCTTTGGAGCCGAGGAGATAGTGAAAAAAATTACACAACATCTTTATGGTACGGGGAAAACTATAATAATGGACAGCTGGTACTTTTCCACTCAATTGATGGATACGCTGAAGAGTTATCAGCTATATACGATAGCTGCTGTACACCCAAAAAGCGAAATTATACCGCCACTGTTTATATCCAAGTACAGAAAATGCCGTAGGAATATGTCTGGATTTCTTGGTGATGTTCTGCTTACGACTAACGCAAACTCTCAATCGAAAGCCACCACAGTTGCCACAAACGACCCTCAATTTCATACAAAGATGACAATCAAAAGTACGACTGCCGTTTCTGTTTACAAAAGAGACCAACCAGCTGTAGAAGTCCTGGATGTATTGATGCATTACTATACGACTTTGCAGCATACAAATGATTGGACACACTCACTGTTTTTCACATTGCTCAACATAGCTGCGGTCAATGCTCAAGTAATATGGAGCTCACAAAACTCTACAGTGATTCCGAGGCGTACATTCATTAGGGATTTGGGCTTGGGCCTGCTAGCGGGTGAATTATCCCTAACGATAACTTCTATAAGTGAACCAGAGTGTAAAAAGCAGCCTGGCATGGAGAGTGAGAAAGACGATGAAGATGAATATGAAGAGGAAAAGACACCGCAACAGTCGAAGGTACCTCACATGCCTGAGGTTTCTATCACCGTGATGCGACCAACCGGCGAGACCTTACAATCGCGCCAAGGAATTCAACAAATCGCCTCCAAAGACTGTCTAATCTGCGGACGCTCCTACAGGTACTCGCACAACGCTCGTAGGCACGAACTCACCTCACATAAGTTCGATAGGTACGTCAACAAAATACAAAATAACAAAAAAACATCATCGTTTATGCAACCCAAACTCAGGCCAAATCCATTCAACCCCAAAGCACGGCTTCTGCCGAATCCGATCAGCCGCAAAATGCAGCTTTTACCTAAAAACATGCCGAAAATAATGCCGCATAAAATAATTTGCCCACCGAAACCGATACCAATTAAAACTGCAAGGACACCGCAGAATAATTTGCCGTATCCTTTGCGTATCAAGGCCCTTAAAGACTTGCAAATAAAGAAAAAAGAACCGCAAATCCTAAAAACATTACTGACATCGAAACCTGAAGTTCTGGTTTCAGAACCTGAGATTATGAACTCTGGGCCTGAAAGTCCTGAAACTCTTATATCCGAACCAGAAATAGCGTCTTTCCAAGTTGAAGCTATTCTGTCTGAGCCTAATGATTACGATGAGTTCCCAGACGAAGAAAAGGATAAAGAAAACCATAACAATCACAGTCAAAACTATGACACGGTCGATATGAACTCTGAAAATGAAATAGAAATCGCTCGGCAACGGGAAAACGAGGACGAGATTGATGCAAAAACTGACGAAGATGACAATATCCATCATGAGGACGAAAACAATGTCCAAGAAACTGATAAAGTTCTGGAAGAGGACACCGAGAAATCTCAAAGCCCTCCAGAAACAGAATCAATGGATATTGACGAAAACTATGAACCTGAAGAAGGTGAAGGAAATAATGAAGACGACGAAGAAAGAAATGAAGAGGGTGAGAATGAAGAACAGGATAATCACCTTCCCTCGCATCATGAGAATGAAGCAAATGATGATGAAGAAGACATGCCGCCCATAGGGCTCGCACCAGAAGTGGAGCTTAACGAGGATCAAAACCACACTTATAACAGCGAAGCGAATGACGATGATGAACCGGACGAAAGCGCTGAACTCAACGAAACAGCTGATGTTGACACAGCTTCCCAAGAAATAGATCCAGAGAAAATTTACGTGACAAATGCGCAAAAAGAGTTTATCAAAAGATATCGCGACATTATCGAACAAGTCAACACTAAAAGGTGTATCTGCTGCGATAAGGAATATCCTCGCAGAAAAGCAGTTATACAACATTTGCAGAAAAATGGGCATAAAGTTCCAAAACATACGTGCTACAACTGTGTTGTAACGTTCGCCGGAATCGGCGCTTTACTCAGCCACATGAGACAGAATGCTTGCACCGATCTCTGGAAAATTATATACGACGAGAAAGGTATTACGAGTGATATGGTCATTGAGGAACCTAAAAGCAAAATCCAAGCCAAAGACATCTTCAACGCTAAGTCTTATGCGTGCAGGTTGTGTCCTGCCAAATTTCAGCTCAAGCAATCTATAATGAAGCATATCTCAGAGTTTCACGAGGACGGTCAGTCTGCCGTTCCCCTTGGCTGTGTCCATTGCGGAGCCACCTTCAAAGACAAATCAGTGATGAAAAGACATATCCGCACTGGCGAATGCACTGTTTACATCCACTGTGATTTATGCTCAGAACAGTTTTCCAGTATGCAAGAATTTAACGATCACGCGCTGTCTGCTCACGCTGAACACTTTGTTAAAACTGAAAACCAAAACAAAGACGGAACAGTCACAGACTGTTATATATGCGGAACTAAAACTAATAGCTATTCCACCCTCCTCAAGCATTTCAAAGCTTTGCATGAGGTAAGACCACTTCACTGTCAATTTTGTGGTGTCAAATTTGAGCAACCCGTCGATCTGAACAAACACATTTACGGGGAACATCCTGATCAACATCCAGAGATGCAGGACGAACCTGATATGTCTGTGGTCAAAGAAGAAGCTGAGGAGTACCACTATTCTTGCACAGAATGCAATGCAATATTTGAAACTGTGGATGCTTGGACCGATCACCAAGTAGCTGAACATAACCAAGTGGCTCATCATTGTGATCAGTGCGAAAAGAAATTTTTGCGACCCTCAGAGCTCGCGGAGCACAAGAACACCCATTTGAGAGTAAAATTCTACCCCTGTGGAATATGCTCAAACTCATACAGTACTCCACAAAAATTGTCTGAACATGTACAAAACGCTCACCCGGGCGTAGGAAATTCGCAAAATGCAGAGACAGAGTTCTTCTGTGAAATTTGTGTTCGTGCTTTCAAAAGCCGTCAAGCCTACTCGAATCATATGCGCATACACGCCAAGGTGCCGACTACCAACAGAAAACCCGGCGAACCCAGAGGATTCGACCCACGTATCATTGGAAAGCCCATCAAGCAATTCACGATGTCCAACGTTGTCCAACCGGGTTTCATCAACTTCAAACCAAATACTGCAAATGTTCCTAATGCTCCATATTCATGTGATATATGCGGCAAAGGCTTCATGCACAAGAAAAATATATGGAAACACAAGAAAGTTTTGCACGCTGATATAATAAATGACAGAAACGATAGCGAGGAGAACACAATGCATGCCTCGACAGAGGAAGACGAATATAATGTTGATGAGAATGGTGCGCTTTTGTCGACGCCACAATTTAACAGTTTTAATTTTACCAACTTTACTAATAATGTACAACAATCGCAGGCGGATCCGATGCCTTTTAGTTGCGACCTATGTCCCAAGCAGTTCCCGCTTAGGACTAGTTTGTGGAAACACAAACGCGCTAAGCATGGAATCGTTAGTACGCCCAGCAGCAACGATGGACAAACACCAGCGACGTCTGGAGAAAGTCAAGGCGGTCGATCTAGCTGTACAATTTGCAAAATAACATTCGCTGACAAAAAATCTTATTATCGCCACAGGAAAAACGTTCATAAATCGACGACGCAAATGTGTAAGATTTGCGGGAAACCTCTCAATTCAACTGATGAGCTGTACCAACATTTAAAGGCAGCTCATGCACGGGAACTGCTAGGTTACAATGCAAATCAGAGTACCAGTAAAGCACAGGACGTTTCACAAGATCTTGAAAATGAATTTGATAACGATCAAGAAGTGACGGATCCCAGTGTCGATTATCAAGCTAGGTATCCGTGCGATACTTGCGGTAAACAATTCGTCGGTTTACTTTCCTTGCAAAACCATCAATGTATAAACCAGTCTCAGTCGCAGCCCCAGACGTTCGATTGTGAAATCTGCCACAAAAGCTACACTTCTATCGCTGCGTTAAAGAGTCACCGCGGTTGGCATTTACGCTCACCCGATGGCAAGGCGGCTGCAAATAACAGCGGTCTCTGGATGCCACAGCACAAAGTCACCAGCAAAGTCAGCAAACACGAAGTAACCGAACCGCCAGTGGTGACTCGACAGAATACGACGCTTGCTTCTGCGGCTAAACGGAGACTACCGCCCGAAGTGGAAGTGACCGTTGTTAACCCGAACAAGAAGTTGCGTTCGGACGACTCTGTTGAGTTAGACACACAGAACGAAGCCATCGAAGGCAGATACTGCACGATATGCGACAAAGAGTTCACAAAACGTGCCGCGTACCAACGCCACATGGACGAGGTTCATCAACCTAACTCAGTTTTTTGTCCCGTCTGCGATAAAAGTTTTACGCGAAAATCTACTCTGCTCGTACACATGAAGAAGCATTACGAAGGCGGGGAGGGCAGTTCGTCGACGGCACAAATAGACGAAGACGAGGGCTATTCGTGTGACCTTTGCGGCGCGCAGTACGATACTGAGAATGCCATGAGGGCTCATAAAGTGAGACATCACGGGGAGGAGGAAGAGTCTGCGGAATCGGAGGAGGATGATGGACATGTTCCAATCGCGCAGCCTGGAGAATTTACCTGCGGCCAGTGTGGGGACGGCGTCGCTACCGCGCGCGATCTCATCACTCACCGCGCCATGCACAATACTCCCACCAAATTCTTCTGTAACATCTGCAAAGTGTACTTCGTAAGAGCGTTAGATCTGTCGTCGCACACGCGCGCAAGACACGCCGATAACGAAAAAGTTTTCTTCCCATGTGCCATGTGTGATCGGTTTTATATGAACAAAAAGAGTTTGCAACGCCACATCGATATGGCTCACTGA
- Protein Sequence
- MTVNYDRVCRLCLSSRGDLLPIFPTTSSDDLEPPILASRIKDCVSVQINENDDLPTNVCRKCMDNVNNWHLFKTVCVKTQNKLQSLIKDGSLLEEVQVKNEPSEETYDDGVVIDGSYPEAENAGSSSKLQPEGPPILASLGLTPRSDKKYVDPRMDWHRVHAILNLVQEKDAIDSLQSLEESDISHRSDHESETDTELLSEIDDTYVTHIKGYICKNKTNLLKNPATKVKNRPKLKKRKMNEHNYCGYPKNAWQLLFTDDLLDIIVSSTNENILRHGKGFSGCTNVGEVKTLIGILYLNGIMRPTHQKCDDLWHLECGVPAIMNAMTKERFNFLIQNICFYSMEDDGTIMQLDSMKRMRKVFEIFAMNCRTTFDVESSAVVDEIIVPVYGPCPFRYEIDKKPLNRGIKVVMLVDPNNFYVSNLDVITDPFFGAEEIVKKITQHLYGTGKTIIMDSWYFSTQLMDTLKSYQLYTIAAVHPKSEIIPPLFISKYRKCRRNMSGFLGDVLLTTNANSQSKATTVATNDPQFHTKMTIKSTTAVSVYKRDQPAVEVLDVLMHYYTTLQHTNDWTHSLFFTLLNIAAVNAQVIWSSQNSTVIPRRTFIRDLGLGLLAGELSLTITSISEPECKKQPGMESEKDDEDEYEEEKTPQQSKVPHMPEVSITVMRPTGETLQSRQGIQQIASKDCLICGRSYRYSHNARRHELTSHKFDRYVNKIQNNKKTSSFMQPKLRPNPFNPKARLLPNPISRKMQLLPKNMPKIMPHKIICPPKPIPIKTARTPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNDYDEFPDEEKDKENHNNHSQNYDTVDMNSENEIEIARQRENEDEIDAKTDEDDNIHHEDENNVQETDKVLEEDTEKSQSPPETESMDIDENYEPEEGEGNNEDDEERNEEGENEEQDNHLPSHHENEANDDEEDMPPIGLAPEVELNEDQNHTYNSEANDDDEPDESAELNETADVDTASQEIDPEKIYVTNAQKEFIKRYRDIIEQVNTKRCICCDKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFAGIGALLSHMRQNACTDLWKIIYDEKGITSDMVIEEPKSKIQAKDIFNAKSYACRLCPAKFQLKQSIMKHISEFHEDGQSAVPLGCVHCGATFKDKSVMKRHIRTGECTVYIHCDLCSEQFSSMQEFNDHALSAHAEHFVKTENQNKDGTVTDCYICGTKTNSYSTLLKHFKALHEVRPLHCQFCGVKFEQPVDLNKHIYGEHPDQHPEMQDEPDMSVVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCGICSNSYSTPQKLSEHVQNAHPGVGNSQNAETEFFCEICVRAFKSRQAYSNHMRIHAKVPTTNRKPGEPRGFDPRIIGKPIKQFTMSNVVQPGFINFKPNTANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEEDEYNVDENGALLSTPQFNSFNFTNFTNNVQQSQADPMPFSCDLCPKQFPLRTSLWKHKRAKHGIVSTPSSNDGQTPATSGESQGGRSSCTICKITFADKKSYYRHRKNVHKSTTQMCKICGKPLNSTDELYQHLKAAHARELLGYNANQSTSKAQDVSQDLENEFDNDQEVTDPSVDYQARYPCDTCGKQFVGLLSLQNHQCINQSQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVTEPPVVTRQNTTLASAAKRRLPPEVEVTVVNPNKKLRSDDSVELDTQNEAIEGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSTAQIDEDEGYSCDLCGAQYDTENAMRAHKVRHHGEEEESAESEEDDGHVPIAQPGEFTCGQCGDGVATARDLITHRAMHNTPTKFFCNICKVYFVRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00663313;
- 90% Identity
- -
- 80% Identity
- -