Basic Information

Insect: Lithosia quadra
Gene Symbol: -
Assembly: GCA_963576445.1
Location: OY754883.1:9405389-9414512[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.71 47 5.2 0.8 3 23 114 134 112 134 0.96

2 16 0.64 43 5.3 0.0 1 20 419 438 419 440 0.94

3 16 0.35 24 6.2 0.8 3 23 451 471 450 471 0.96

4 16 3.7 2.5e+02 2.9 1.0 1 23 487 510 487 510 0.93

5 16 0.01 0.68 11.0 1.8 1 23 519 542 519 542 0.95

6 16 0.0076 0.51 11.4 0.0 2 23 619 641 618 641 0.93

7 16 9.9 6.6e+02 1.6 3.4 1 23 646 669 646 669 0.93

8 16 4.3e-05 0.0029 18.5 1.8 1 23 675 697 675 697 0.97

9 16 1.4e-05 0.00092 20.0 1.9 1 23 704 726 704 726 0.98

10 16 0.0001 0.0068 17.3 2.3 1 23 731 753 731 753 0.96

11 16 0.00098 0.066 14.2 2.0 1 23 759 781 759 781 0.97

12 16 5.7e-07 3.8e-05 24.4 1.9 1 23 787 809 787 809 0.98

13 16 5e-05 0.0034 18.2 3.6 2 23 816 837 816 837 0.98

14 16 0.00022 0.014 16.3 0.3 2 23 845 867 844 867 0.97

15 16 0.00021 0.014 16.3 0.4 1 23 872 894 872 894 0.96

16 16 0.032 2.1 9.4 5.0 1 23 900 923 900 923 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.71	47	5.2	0.8	3	23	114	134	112	134	0.96
2	16	0.64	43	5.3	0.0	1	20	419	438	419	440	0.94
3	16	0.35	24	6.2	0.8	3	23	451	471	450	471	0.96
4	16	3.7	2.5e+02	2.9	1.0	1	23	487	510	487	510	0.93
5	16	0.01	0.68	11.0	1.8	1	23	519	542	519	542	0.95
6	16	0.0076	0.51	11.4	0.0	2	23	619	641	618	641	0.93
7	16	9.9	6.6e+02	1.6	3.4	1	23	646	669	646	669	0.93
8	16	4.3e-05	0.0029	18.5	1.8	1	23	675	697	675	697	0.97
9	16	1.4e-05	0.00092	20.0	1.9	1	23	704	726	704	726	0.98
10	16	0.0001	0.0068	17.3	2.3	1	23	731	753	731	753	0.96
11	16	0.00098	0.066	14.2	2.0	1	23	759	781	759	781	0.97
12	16	5.7e-07	3.8e-05	24.4	1.9	1	23	787	809	787	809	0.98
13	16	5e-05	0.0034	18.2	3.6	2	23	816	837	816	837	0.98
14	16	0.00022	0.014	16.3	0.3	2	23	845	867	844	867	0.97
15	16	0.00021	0.014	16.3	0.4	1	23	872	894	872	894	0.96
16	16	0.032	2.1	9.4	5.0	1	23	900	923	900	923	0.97

Sequence Information

Coding Sequence: ATGAGTTCTGATGATTCTGATGATGAGCCGCTGTCAGTTATTGCGGGGAAGAAAAAACTACACCCTGAAAATTTCGTCCAAACAACTTCAACAGCCTATAAAGAGGTAAAGATtacaaaaaagaagaaaaagaaattgaCGCCTCCGAAGCGACTTTCAGTTACCATTAAACTCCAAAAAAATGAGCAACCTCCAGTAATAGAGCGACCCGCCGATGTTTGGCTTTACATGAAGGATTTGAACCCTGCAGGACCTTACAGCTGTTTATTATGTCCTGAGTGGTTCATAAATAGGGCGAAGATAATCCTTCATTACTGCCTAAATCATAAGAAGGATTTTTGTggtatatgtagGTACTTCGTTCCTAACCGGGAAGCCTGGTGTGACCATATGAAGTTCCACACACCATGGCCATGTTCACAGTGTATTGAAAACTTTGCAACAGAGCCTATTTTACGTTTGCACCTTAAAACAGTTCACAAACTTGTTCATTGTAGGCTCTGTCATTTTAGGGTTTCAGATGGTGAACTGTACCACTCTCATCTATTTCAAAAGCATAATGTGTTAAACGTTGCAAACAAAGATCTAGATAACTTATGGGACTTTGAATATGATGGATGCCCAACATTTTCATGTGTACTTTGTGCCAAAACTGATAATGTTGTAAGAACATTCTTCAATCACTACATGGGTTATCACCATTTCACATTAAAGTGCTTTACAAGTCTGGTAGCTGGGAGAGATTTACCATTTGTTGTGCATGGAGCTGATGTTAGAAATGAATTCATTGAAGAACAATTGAAGCGTCATCCACGATATGGCTATGTGGATTTAGAGTTCAAACTCAGTAATTGTATAGGATCTGATACTACCACAAGTGATGCAAAAGAGTTGCTGAAAGTCCTACTACCAGAGATTAAGCAGGAAAGTTTAAGTGGAGATGAAGCAAAGAGTATTAAAGAAGGAGACTCAAAGCTTGATGAGCTTGTGAAAAGCTATGAGGGAGATGAAGACTATGATGTTACACTAACTGAACTAGTTGTTTTAGAAAGATGTTACTTTGATTATGTTACTCAAATTTTGTCAGACATCAAATCAAATGTACTCCATGAGCTTTCTGATATTGATTACGATAAATCCACATCTGATCTATGTATGGACATAAGTTGCCCTTTATGTAATGTGGAACAAAACAGTGTGCAGGCATTTGTTGTACATATGACAAAAATGCATTCCATTAAGTACAaatcaatttattcatgtagAGTTTGTGCTGCAGTGTTTGACAGCCAGAATGAGCTTGACATTCATGTATCTCAGGAGCTGGGGGATTTCAAGGACCTATGGCTTTGTCAATTTTGTGATGAGGAGTTTCAAGATCGACAGGAAACGAGGAAACATTTAACAGAGCACTGGGATTTGTTAGAGTATGACAATTGTTTTAGTCCACATTTGGGCTTCAAATGTATGTATTGCCCAACTCTCTTTTGGCATGAAAAGGACCGTGAAGCTCATCAAATTAGAGTCCATTATATTAGGCATAAAGATTGTTATTACAAGTGTGAAATCTGCAATGATGTTTTTAGTGATAAGATTTGGTTCATCCATCACTACTTCTCGCAACACACTACAGAAGATAAAATTCCCCTTTATCTCATGAAATGCTCCCTGTGTTGCTTGGTGCTGCCCAATATTGAAGAAATGAGGACACACTTCAAAAGTCTACATCCAGAAGCTAAGAAGTTGTATTGCTCACTAGGTTCTTGCAAATATAAGCCATTGAGTCATAGGAAGAGCTTCAAACTTCATGTGAGGTCAATCCACAATCCTCAACACCGCGTTGAACGCAATTTGGAGTGTACAGTATGCGGGCGAGAGTTTAGCAGCACTCGAGCGGCAAGTGCACACATGGCCCAGGCACATGGACCTGGCAAGTTTAAGTGTAAGCTGTGTGAAGAAGTACTACACACCATGGATGAGAGAAAACTCCATTACCTCATATGTCACCCTGGGCAGCATCCCTTCGAGTGTTCAGAGTGTGGCAAGTCGTTCCAGTACAAGTCTTCCTTATACATGCACAAACAAGAGCACATGCCTAATAAACAGAACTATACTTGCACCTATTGTGGAAAGACGTTCATGAAACGCGACTCGTTCCGTGAACACGTCCAGATCCACGAAGGGCCCCGTCACGCTTGTTCGTACTGCCCAATGCGGTTTGTCCAGCGATCGAACATGCTACGTCACGAGCGACGTCACACGGGCGAGCGTCCGTACGCCTGCCCGCACTGTCCGCGCAGCTTCGCGGATAAGGGCGCCTGTAACTCACACtctagGACACACTCAAGAGATACTAACTACGCGTGTATGTATTGCGGGAAGACTTTTGTTCAGAAATCGAAGCTGACATATCATATAAGGAAGCATACAGGCGAGAATTTAGAAACGTGTACAGTCTGTTCGAAGATGTTTACCAGCGCCTGTTCGTTGCGTGAGCACATGAAGACGCACATCATTAAGAGGAACACCATCAAGTGCCCGTTGTGTGACCGTATGTACGCGGACGAGCGCTACATGCTGCGGCACCTGCGCACGTCGCACACGCACGCGCGGCACGCCTGCCCGCTGTGCGACAAGATGCTCACCAGCCCCGCCGGCCTGCGCCACCACGTCATCACGCACACCAAGCTCAAGACCTTCCGCTGCAAGTTGTGTCCAAAAGTGTGCTCTGTCAAAAGAACAATCATGAAGCACTTCCGTAAGAGGCACGGCTTTAAAGGCAATGAACCCAATGTGAAAGACTTCTACACGCGGCTGGAACCCAGAGAATGCAACCTAGGTCTGGACGAAGCAGTAATGACCAGTATTTTTGGACCTCCAAAGCGCCCAGTAAGCGACCTACTCATAGGAGATTATGTTACGGTTGCTAATATTGAACAAAAGGGGAGAGAAAAGCAGGCAGGTGATCTAGAAAtggacgatgatgatgatgaagacgaTGAACTAAATGAATCTAAATCGGATTCTGAAGATTCTAGAGAGAGTGAGAAAGGTAAAAGCAACTCGGACAGTGAAAAAGACACAACTATGAagacacattctgtgaaaattgaAGCTAAGGAGTATAACAGTGATCAAGGTGAACACGAACTTGAACCTACTGATTTTGTCAGTGTTAAAATTGAACCTATGGACGACGAAGATATTGAAGTCActtaa
Protein Sequence: MSSDDSDDEPLSVIAGKKKLHPENFVQTTSTAYKEVKITKKKKKKLTPPKRLSVTIKLQKNEQPPVIERPADVWLYMKDLNPAGPYSCLLCPEWFINRAKIILHYCLNHKKDFCGICRYFVPNREAWCDHMKFHTPWPCSQCIENFATEPILRLHLKTVHKLVHCRLCHFRVSDGELYHSHLFQKHNVLNVANKDLDNLWDFEYDGCPTFSCVLCAKTDNVVRTFFNHYMGYHHFTLKCFTSLVAGRDLPFVVHGADVRNEFIEEQLKRHPRYGYVDLEFKLSNCIGSDTTTSDAKELLKVLLPEIKQESLSGDEAKSIKEGDSKLDELVKSYEGDEDYDVTLTELVVLERCYFDYVTQILSDIKSNVLHELSDIDYDKSTSDLCMDISCPLCNVEQNSVQAFVVHMTKMHSIKYKSIYSCRVCAAVFDSQNELDIHVSQELGDFKDLWLCQFCDEEFQDRQETRKHLTEHWDLLEYDNCFSPHLGFKCMYCPTLFWHEKDREAHQIRVHYIRHKDCYYKCEICNDVFSDKIWFIHHYFSQHTTEDKIPLYLMKCSLCCLVLPNIEEMRTHFKSLHPEAKKLYCSLGSCKYKPLSHRKSFKLHVRSIHNPQHRVERNLECTVCGREFSSTRAASAHMAQAHGPGKFKCKLCEEVLHTMDERKLHYLICHPGQHPFECSECGKSFQYKSSLYMHKQEHMPNKQNYTCTYCGKTFMKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACNSHSRTHSRDTNYACMYCGKTFVQKSKLTYHIRKHTGENLETCTVCSKMFTSACSLREHMKTHIIKRNTIKCPLCDRMYADERYMLRHLRTSHTHARHACPLCDKMLTSPAGLRHHVITHTKLKTFRCKLCPKVCSVKRTIMKHFRKRHGFKGNEPNVKDFYTRLEPRECNLGLDEAVMTSIFGPPKRPVSDLLIGDYVTVANIEQKGREKQAGDLEMDDDDDEDDELNESKSDSEDSRESEKGKSNSDSEKDTTMKTHSVKIEAKEYNSDQGEHELEPTDFVSVKIEPMDDEDIEVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167054;
90% Identity: iTF_00638051; iTF_01167054; iTF_00636893;
80% Identity: -