Egri022880.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759241.1:14265088-14277648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.7 6.1e+02 2.6 0.8 1 23 84 107 84 107 0.94 2 16 0.75 96 5.1 0.1 3 23 112 132 110 132 0.96 3 16 0.8 1e+02 5.1 0.0 1 20 417 436 417 438 0.93 4 16 0.36 46 6.2 0.8 3 23 449 469 448 469 0.96 5 16 8 1e+03 1.9 1.0 1 23 485 508 485 508 0.87 6 16 0.00022 0.028 16.3 1.4 1 23 517 540 517 540 0.95 7 16 0.011 1.4 10.9 0.1 2 23 617 639 616 639 0.92 8 16 4.4e-05 0.0057 18.5 1.8 1 23 673 695 673 695 0.97 9 16 1.4e-05 0.0018 20.0 1.9 1 23 702 724 702 724 0.98 10 16 0.0001 0.013 17.3 2.3 1 23 729 751 729 751 0.96 11 16 0.001 0.13 14.2 2.0 1 23 757 779 757 779 0.97 12 16 5.8e-07 7.5e-05 24.4 1.9 1 23 785 807 785 807 0.98 13 16 5.1e-05 0.0066 18.2 3.6 2 23 814 835 814 835 0.98 14 16 0.00022 0.028 16.3 0.3 2 23 843 865 842 865 0.97 15 16 0.00022 0.028 16.3 0.4 1 23 870 892 870 892 0.96 16 16 0.037 4.7 9.3 4.3 1 23 898 921 898 921 0.97
Sequence Information
- Coding Sequence
- ATGAGTTCCGATGATTCTGATGATGAGCCGCTATCAGTTATTGCGGCGAATAAAAAGCTACACCCCGAAAATTTCGTCCAAAAAACTGCCTATAAAGTGGTAAAGGttacaaaaaagaagaaaaagaaattaactCCTCCAAAGCGACTTTCGATTACCATTAAACTCCAGAAAAATGAACAACCTCCAGTAATAGAGCGCCCTGCCGATGTATGGCTTTATATGAAGGATTTGAACCCTGCAGGGCCTTACAGCTGTTTATTATGTCCTGAATGGTTCATAAATAGGTCAAAGATAATCCTTCATTACTGCCTGAACCATAAGAAAGATTTTTGTGGTATATGTAGGTACTTCGTGCCTAGCCGTGAAGCCTGGTGGGAGCATATGAAGTTTCACACACCATGGCCATGTTCCCAGTGTATTGAAAACTTTGCGACTGAGCCTATTTTACGGTTGCACCTTAAAACAGTTCATAAACTGGTTCACTGTAGGCTCTGTCACTTTAGAGTTTCAGATGGAGAACTCTACCACTCACATTTATTCCAAAAGCATAATGTGTTAAATGTTGCAAATAAAGATGTAGATGATTTATGGGATTTTGAATATGATGGATGCCCAACATTTTCATGTGTACTTTGTGCCAAAACTGATAATGTTGTAAGAACATTCTTCAATCACTACATGGGCTATCACCATTTCACTTTAAAGTGCTTCACAAGTCTAGTGGCTGGGAGAGATTTACCATTTGTTGTACATGGAGCTGATGTTAGAAATGAATTCATTGAAGAACAATTGAAGCATCATCCACGATATGGCTATGTGGATTTAGAGTTCAAACTCGGAGATTGCTTAGGATCTGATCCTACCACAAGCGATGCAAAAGAGTTGCTGAAAGTATTACTCCCAGAGATTAAGCAAGAGAGTTTAAGTGGGGATGAAGCAAAGGGTACCAAAGAAGGAGACTCAAAGCTTGATGAGCTTGTGAAAAACTATGAGGGAGATGAAGACTATGATATGACTCTAACTGAACTAGTTGTTTTAGAAAGATGTTACTATGACTATCTTACTCAAGTTTTGTCAGACATCAAATCAAATGTAGTCCATGAAATTTCTGATGTTGATTATGAGAAATCAACAGCGGATCTATGTATGGATATAAATTGCCCTCTATGTAATGTGGAACACAACAGTGTGCACGCATTTGTCACACATATGACAAAAATGCATTCCATTAAGTACAAATCAATTTTTTCATGTAGAGTTTGTGCTGCAGTGTTTGACAGTCAGAATGAGCTTGACAGTCATGTAGTCCGTGAGCTAATGGATTTTAAGAACCTATGGCTTTGTCAATTTTGTGATGAAGAATTTCAGGACCGACAGGAAACAAGAAAACATTTAACCGAGCATTGGGACTTGTTGGAGTATGACAATTGTTTTAGTCCACATTTGGgctttaaatgtatgtattgccCAACACTCTTTTGGCATGAAAAGGACCGGGAAGCTCATCAAGTTCGAGTTCATTTTTCTAGGCATCAAGATTGTTATTACAAATGTGAGATCTGCAATGAAGTTTTTAGTGATAAGATTTGGTTCATCCACCATTACTTCTCATTACACACCACTGGAGATAAAATTCCTCTATTTCTAATGAAATGCACACTGTGCTGCTTGGTGGTGTCCAATATCGAAGAAATGAGGACCCACTTTAAAAGTCTACATCCAGAAGCTAAGAAGTTGTATTGTTCACTAGGCTCTTGCAAATATAAGCCTCTGAGTCACAGGAAGAGCTTCAAACTTCATGTGAGATCAATCCACAATCCTCATCAACGCATCGAACGCAATTTGGAATGCACTGTGTGCGGACGCGAGTTTAGCAGCACTCGAGCTGCTAGCTCGCACATGGCTCAGGCACACGGACCTGGCAAGTTTAAGTGTAAGCTGTGTGAAGAAGTGCTACACACCATGGATGAGAGAAAACTCCATTACCTCATATGTCACCCTGGGCAGCATCCCTTCGAGTGTTCCGAGTGTGGGAAGTCATTCCAGTACAAGTCTTCATTATACATGCATAAACAAGAGCACATGCCTAATAAGCAGAACTATACATGCACCTACTGTGGGAAGACATTCATGAAACGCGACTCGTTCCGCGAGCACGTCCAGATTCACGAAGGGCCGCGCCACGCTTGTTCGTACTGTCCGATGCGGTTCGTCCAGCGGTCGAACATGTTACGTCACGAGAGACGTCATACAGGCGAGCGCCCGTACGCGTGCCCGCACTGTCCACGGAGCTTCGCCGATAAGGGAGCATGTAACTCGCACTCTAGGACACACTCAAGAGATACGTCGTATGCCTGTATGTATTGCGGGAAGACTTTTGTCCAGAAATCGAAACTGACCTATCATATTAGGAAGCATACAGGCGAAAATTTAGAAACATGCACAGTCTGTTCGAAGATGTTCACCAGCGCCTGTTCGTTGCGTGAGCATATGAAGACGCACATCATTAAGACGAACACTATCAAGTGCCCCTTGTGTGACCGCATGTACGCGGATGAGCGCTACATGCTGCGACACCTGCGGACATCGCACACGCACGCGCGCCACGCCTGCCCGCTGTGCGACAAGATGCTCACGAGCCCTGCCGGGCTGCGCCACCACGTCATCACGCATACCAAGCTCAAGACCTTCCGGTGCAAATTGTGTCCAAAAGTGTGCTCCGTCAAAAGAACAATCGTGAAACACTTCCGTAGAAGGCATGGCTTTAAAGGTAATGAACCCAATTTGAAAGACTTCTACACAAGGCTGGAACCTAGAGAATGCAACCTCGGTCTGGATGAAGAAGTCATGACCAGTATTTTTGGACCTCCAAAGCGCCCTGTAAGTGACCTACTAATAGGAGACTATGTTACCGTCGCTAATCTTGAACAAAACAGGAGAGGAAAGCAAACAGAAAACGCGGAAatagatgacgatgatgatgatgaagacgaTGAACTAAATGAGGGATCTAAATCAGATTCCGAAGATTCAagagagagtgagaaaggcaaaagCAATTCAGAGAGTGACAAAGATACAACTATGAATACACATACTGTTAAAATTGAAGCTAAAGATTATAATAGTGATCAAGGTGAACACGAATTGGAACCTACTGATTTTGTTAGTGTTAAAATTGAACCTTTGGATGATGAAGATATTGAGGTCACTTAA
- Protein Sequence
- MSSDDSDDEPLSVIAANKKLHPENFVQKTAYKVVKVTKKKKKKLTPPKRLSITIKLQKNEQPPVIERPADVWLYMKDLNPAGPYSCLLCPEWFINRSKIILHYCLNHKKDFCGICRYFVPSREAWWEHMKFHTPWPCSQCIENFATEPILRLHLKTVHKLVHCRLCHFRVSDGELYHSHLFQKHNVLNVANKDVDDLWDFEYDGCPTFSCVLCAKTDNVVRTFFNHYMGYHHFTLKCFTSLVAGRDLPFVVHGADVRNEFIEEQLKHHPRYGYVDLEFKLGDCLGSDPTTSDAKELLKVLLPEIKQESLSGDEAKGTKEGDSKLDELVKNYEGDEDYDMTLTELVVLERCYYDYLTQVLSDIKSNVVHEISDVDYEKSTADLCMDINCPLCNVEHNSVHAFVTHMTKMHSIKYKSIFSCRVCAAVFDSQNELDSHVVRELMDFKNLWLCQFCDEEFQDRQETRKHLTEHWDLLEYDNCFSPHLGFKCMYCPTLFWHEKDREAHQVRVHFSRHQDCYYKCEICNEVFSDKIWFIHHYFSLHTTGDKIPLFLMKCTLCCLVVSNIEEMRTHFKSLHPEAKKLYCSLGSCKYKPLSHRKSFKLHVRSIHNPHQRIERNLECTVCGREFSSTRAASSHMAQAHGPGKFKCKLCEEVLHTMDERKLHYLICHPGQHPFECSECGKSFQYKSSLYMHKQEHMPNKQNYTCTYCGKTFMKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACNSHSRTHSRDTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCTVCSKMFTSACSLREHMKTHIIKTNTIKCPLCDRMYADERYMLRHLRTSHTHARHACPLCDKMLTSPAGLRHHVITHTKLKTFRCKLCPKVCSVKRTIVKHFRRRHGFKGNEPNLKDFYTRLEPRECNLGLDEEVMTSIFGPPKRPVSDLLIGDYVTVANLEQNRRGKQTENAEIDDDDDDEDDELNEGSKSDSEDSRESEKGKSNSESDKDTTMNTHTVKIEAKDYNSDQGEHELEPTDFVSVKIEPLDDEDIEVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167054;
- 90% Identity
- iTF_00909180;
- 80% Identity
- -