Lqua021583.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- Zfy1
- Assembly
- GCA_963576445.1
- Location
- OY754900.1:7824463-7827966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.078 5.2 8.2 7.1 1 23 139 162 139 162 0.95 2 17 3.9e-05 0.0026 18.6 1.1 1 23 171 194 171 194 0.96 3 17 0.022 1.5 9.9 0.7 2 23 207 229 207 229 0.97 4 17 0.00058 0.039 14.9 1.2 1 23 238 261 238 261 0.97 5 17 0.00056 0.038 14.9 3.2 1 23 273 296 273 296 0.97 6 17 0.00016 0.011 16.6 0.5 2 23 331 353 330 353 0.97 7 17 0.00095 0.064 14.2 1.6 2 23 363 385 362 385 0.96 8 17 0.14 9.3 7.4 1.7 3 20 391 408 389 410 0.90 9 17 0.0014 0.096 13.7 0.2 2 21 415 434 414 437 0.94 10 17 0.058 3.9 8.6 1.2 3 23 447 468 445 468 0.95 11 17 0.00041 0.028 15.4 3.8 1 23 473 496 473 496 0.94 12 17 0.00011 0.0075 17.1 2.1 2 23 509 531 508 531 0.97 13 17 0.62 42 5.4 3.0 1 23 556 579 556 579 0.90 14 17 0.15 10 7.3 0.1 2 23 583 604 582 604 0.93 15 17 0.0048 0.32 12.0 1.4 2 23 610 631 609 631 0.97 16 17 0.02 1.3 10.1 0.1 1 23 697 719 697 719 0.97 17 17 0.09 6 8.0 2.0 1 23 725 748 725 748 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAACCGATGTTGAAGTAAAAGTCAAAGTTGAAAGAAAAGATCCTACCTCATTTTTGCCTGAAGAACCTATGtcatatgaaattaaaaagaaaaagaagaagaagaagaaaaagaaggatATAGAAGATCCATTTAAAGATATTGATGATAAAAGCATACAACCAGTAGCTATTGAAATGGCACCAACCACTTTTGACCCAGAAGTTAATATAAAAGCGGAGAATATCGAAGTTGAAATAGACTTTCAtgatATGTTAGATACGGGACGCCATAGTGATGATAGTCTGCCAGACGAGCGAGCTGTGAAAATCGAGAACCAAAATGCCCTTCTGCTAACTTTTGAAAATGTCATCAGGGACAAAAAGCTATTGATCCCCGAGGAGTTAGATATCCCGTCTAAACCGGAGCATTTTTGCAAAGTGTGTCATCTAGTTTTCCAGTCAACTAAAACCCTGAGAATGCATCAGAAAAGGAAACATAAAGTGTTTAGAAAGTCATTCAAACATATTTGTGATTACTGTGGGATGtcttatgaaacaaaaaatagtttagtCGCACATATTAAGCGGAAACACGGACCGGATTCAACACCTGATGATAAGGAGGAAAGAACTTGTGAAATATGTGCTTTAGTGTTTAAAGGTATGAACAGGTTACGCATGCATATGAGACGGAAACATGGGTCGTTCCAGGACACTTTCTTGCATGAATGCCAAGACTGTGGCCTGACTTATGAGAAATATAGAAGTTTAATTGTCCATATACAACGTAAACactcaaatcaaataaaaccaGAGATGAGTCAGTGGTACAAATGTATGTTTTGTCAAAAGGTGTTCACTAAGAGAGAAACCTATGCAAGACATGTGCAAAGAAAACATAGAATCCCAGATGTTACAgatgataatataaaacaagAGAAAAATGTAGATAACTTAGAGGGAGATTTGGAGAACTGTAAAGATGAGCAGACCGGAGAAATCACTTGCACGGAGTGTCCTCTAGTATTTTCATCAGTGAATTTCCTGAAACTGCATATGCGAAGAAAACATAATGCATTGAAGGAGGACTTCAGATTGAAATGTAGAATTTGCAACTTATCTTATAACAAGATTGAAAGTCTTAAACGCCACGTTAGACGGAAACATGATCAGGGATCGCATTGCGAAGTGTGCAATAAACAATTTGATTCTAGAGAAATGTATTTGAATCATTCACACACAAGAATTGTAAAGGAGTGCCCAATCTGTGGGCTCATATACGCTTCTCAAGGTGGTTTAGCTAAACACTTACGGTGTACGCACAAACTAGACTCACCGAAAACAATATTCTGTAGCCTGTGCAATGAAGGATTTCATGACAAACGTCAATTGAAACCGCATTTAATGAAAGTGCATTTAAAAGTATCTTACACATGTAAATTCtgcaaaaaagtttttaaagcaAAAGAGAGTTATCGAAGACATATTCTGTTTAAGCATCCTACTGCAAATCTGGTTAACACCACTCAGTTACAAAAATGTGAGCAATGTACTGAAACTTTTAAGGATGAATTTGAACTTTGCAGACACATAAATATGGTCCACAGGCATAGTGATGAGAATACAGCAAATAATGAGATAGAAATAAAGAAGGAGGATgaggatataaaaaataatttccatTGCACCAAGTGTCCAGAAATATATCTAACATGGGAGCAGTTAAAATTACATTATGTACAATGTCATAATACAACACAATGTCAGATCTGTGGGGAGGTATTACCCGGGAACGAATTACAAAAGCATATtagaaatttacataaatttccCGAGTTGCAATGTAAATATTGCGAGTTTAAAACtaatgttaaaattagcttGACGCAGCATATGTTGAGACATAAAAACGCTGCAACATTACGTTGTAACTACCCGTTTTGTAGATATAAGACGTTCTATGAAGGTGCTATGGAGAAACATAAGAAAAAGCATCTCGATCAGGGAGTCAAACTCCAATGTACTCAATGTCCGTTTCAAACTATgaataagtacattttaaagTATCATGAAGAGGCGCATGCGACCGGTCTAAAAAGATATATGTGCGATCAGTGTGATTACGCAACGATTCTGCCAGCGAACTTAGTGCAGCATAAGTACAAACATTCTACGGAAAAAAGGTTTAAATGCGACGTATGCCCTTTCGCGACGAAGTACAATACGTCATTAAGGTTCCATGTTAGAAAGAAGCACTGTGATCTCCCGACATTcaactaa
- Protein Sequence
- MEETDVEVKVKVERKDPTSFLPEEPMSYEIKKKKKKKKKKKDIEDPFKDIDDKSIQPVAIEMAPTTFDPEVNIKAENIEVEIDFHDMLDTGRHSDDSLPDERAVKIENQNALLLTFENVIRDKKLLIPEELDIPSKPEHFCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKHICDYCGMSYETKNSLVAHIKRKHGPDSTPDDKEERTCEICALVFKGMNRLRMHMRRKHGSFQDTFLHECQDCGLTYEKYRSLIVHIQRKHSNQIKPEMSQWYKCMFCQKVFTKRETYARHVQRKHRIPDVTDDNIKQEKNVDNLEGDLENCKDEQTGEITCTECPLVFSSVNFLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVRRKHDQGSHCEVCNKQFDSREMYLNHSHTRIVKECPICGLIYASQGGLAKHLRCTHKLDSPKTIFCSLCNEGFHDKRQLKPHLMKVHLKVSYTCKFCKKVFKAKESYRRHILFKHPTANLVNTTQLQKCEQCTETFKDEFELCRHINMVHRHSDENTANNEIEIKKEDEDIKNNFHCTKCPEIYLTWEQLKLHYVQCHNTTQCQICGEVLPGNELQKHIRNLHKFPELQCKYCEFKTNVKISLTQHMLRHKNAATLRCNYPFCRYKTFYEGAMEKHKKKHLDQGVKLQCTQCPFQTMNKYILKYHEEAHATGLKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405296;
- 90% Identity
- iTF_00405296;
- 80% Identity
- -