Basic Information

Insect: Lithosia quadra
Gene Symbol: -
Assembly: GCA_963576445.1
Location: OY754897.1:1504438-1506880[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00056 0.038 15.0 0.6 1 23 5 27 5 27 0.93

2 15 0.38 26 6.0 0.5 1 23 100 122 100 122 0.97

3 15 0.00082 0.055 14.4 0.2 1 23 126 148 126 148 0.95

4 15 0.048 3.2 8.9 0.5 1 23 153 176 153 176 0.92

5 15 0.00084 0.056 14.4 1.8 1 23 182 205 182 205 0.93

6 15 0.035 2.4 9.3 0.2 1 12 212 223 212 227 0.87

7 15 0.053 3.5 8.7 0.2 1 23 334 357 334 357 0.95

8 15 1.4 92 4.3 0.6 2 23 382 404 381 404 0.92

9 15 0.15 10 7.3 0.1 1 23 428 450 428 450 0.96

10 15 0.00027 0.018 16.0 0.2 1 23 454 476 454 476 0.98

11 15 8.6e-05 0.0058 17.5 0.5 1 23 481 504 481 504 0.96

12 15 0.0027 0.18 12.8 0.3 2 23 511 533 511 533 0.93

13 15 0.045 3 9.0 6.4 1 23 540 563 540 563 0.96

14 15 0.0018 0.12 13.4 2.2 2 23 570 591 569 591 0.96

15 15 3.3e-05 0.0022 18.8 1.8 1 23 597 619 597 619 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00056	0.038	15.0	0.6	1	23	5	27	5	27	0.93
2	15	0.38	26	6.0	0.5	1	23	100	122	100	122	0.97
3	15	0.00082	0.055	14.4	0.2	1	23	126	148	126	148	0.95
4	15	0.048	3.2	8.9	0.5	1	23	153	176	153	176	0.92
5	15	0.00084	0.056	14.4	1.8	1	23	182	205	182	205	0.93
6	15	0.035	2.4	9.3	0.2	1	12	212	223	212	227	0.87
7	15	0.053	3.5	8.7	0.2	1	23	334	357	334	357	0.95
8	15	1.4	92	4.3	0.6	2	23	382	404	381	404	0.92
9	15	0.15	10	7.3	0.1	1	23	428	450	428	450	0.96
10	15	0.00027	0.018	16.0	0.2	1	23	454	476	454	476	0.98
11	15	8.6e-05	0.0058	17.5	0.5	1	23	481	504	481	504	0.96
12	15	0.0027	0.18	12.8	0.3	2	23	511	533	511	533	0.93
13	15	0.045	3	9.0	6.4	1	23	540	563	540	563	0.96
14	15	0.0018	0.12	13.4	2.2	2	23	570	591	569	591	0.96
15	15	3.3e-05	0.0022	18.8	1.8	1	23	597	619	597	619	0.98

Sequence Information

Coding Sequence: ATGAAGAATTTGTACATTTGCTTTTACTGTGATCGGCAATTCACTGACCCTGTTAAGCTTAGACTCCATAATCTTGAGCATTCTCCATTGAAAAGTTCTGAAGTAAAAGTTGCTATGTCTAAACTAAGGAAATACGAATTAGTTAAAGTAGATGTCACAGATGTCAAATGTAGACTTTGTGAGGACGAAATTCCTGATTATCCATCGTTAAAATGGCATCTGCTAGAAAAGCACAACAAACCTCTAGATCCTAAATCAGCTGATGGTTTACTGCCTTTCAAAGTTACTGCAGAAGAATTTCAATGTGTGTTATGTATAGAAAAATATACAGAATTCAAATCGTTAAATCAACACGTGAATGTACATTTCCAGAATTTCATTTGCGAGCAATGTGGCACTGGTTTCGTAACACCAGAGCGTTTAAGAACTCATGCGTTCTCACACGAAACTGGTTCCTTCCCTTGTGATAGCTGCAATAAAATATTCCGCTCGACAAACGCAAGGAATGAACATTTTGCCACAGTACACATGAAAGTGAAACGACATAGATGTCCGCAATGTCCCGAGACATTTAGAAACTACTTCCAACGGAACAAACACATTTCAGCAGTTCATGGTGTAAAGCTAAAAGAATTTAAGTGCACAATGTGTCCGAAAGTGTTCACGTTAAGTGGATCCGTCTCGCCCATACCTGAATCGAAGCGAAGAATTGTGCCGTTATTTCAAGTGGCTTACGACAGAAGTCTATGTAAACCACTTGGCACCTTAATGGACTTCAAGTCATTCAATAAAGCTTGCAAAAAGATTACTATACCTCAAACTCCGTCTCGAAGTCCTTCGCCTATTTGTATGCCAAGATCTCCATCCCCGTTAATTGAAACAACAGAGTCTATTAAACCAGTATATCCTAGACCTAAGAAGAATCCGGATGTAAGACAAAACGCTTTGGCTGTATTCGAATTCTCGACTGTATATCCTTTTGTTTATGGAAACAATAAGTTCAAGTGTTTTATATGCTCACAACCCTTTTTGGACCTTCCCTTGCTAAAGGACCACATGAGCGAAAACCACACTTTCGCTCCTCTCAAAAGGTTACTTAATAACCGAAgagaaaatgttttaaaagtcGACGTGAGTGACATCACATGTAAAATATGTTCTGCTAAACCAACAGATTTGCTCCAATTAAAACATCATCTAAAAGAAGCTCACAGCAAATCTGTAAACTTGGATATCAATGACAATTTAATTCCATTTAAACTGGAATTAGTCGACGGGTCCTATAAATGTGTTATATGTGAGGAGAATTTCATCAAAGTCCGTATATTAGTCATCCATATGAGCGTACATTTCAATAACTATAGCTGCGAGATTTGTGGTTCGGGTTTCATGACGCTGCGGCttctgaaaaagcatttggagGTCCACGAAACTGGCAACTTCCCTTGCGACCGCTGTAATAAAGTTTTTAGCACTCCTTACAAAAGGACGTTGCATATTCGAGGCGTGCATCTAAAACAGTATCCAAGAAGATGTCCTATTTGCCCAGAAAGATTTAATTCGAATTATAAAAGGACTATTCATTTGCAAGATGTTCATAACCAGTCCACAAGAGTGCATAAATGTGAAACGTGTGGAAGGGGCTTTAATTTGAagtatcatttgatttgtcatACGAGATCTGTGCATTTGCAAGAGAGGAATCAACAATGCGCAGTTTGTATGCAAAGATTCTGTAATAAGGAATCGTTGAAGCGTCATATGGTTATCCATACTGGAGAGAAGAAGCATAAATGTGATGTATGCGGTATGGCGTTTCTGAGAAGGAAGAATTTGAAGGACCATATGCGTTTGCATAACGGGCAgtaa
Protein Sequence: MKNLYICFYCDRQFTDPVKLRLHNLEHSPLKSSEVKVAMSKLRKYELVKVDVTDVKCRLCEDEIPDYPSLKWHLLEKHNKPLDPKSADGLLPFKVTAEEFQCVLCIEKYTEFKSLNQHVNVHFQNFICEQCGTGFVTPERLRTHAFSHETGSFPCDSCNKIFRSTNARNEHFATVHMKVKRHRCPQCPETFRNYFQRNKHISAVHGVKLKEFKCTMCPKVFTLSGSVSPIPESKRRIVPLFQVAYDRSLCKPLGTLMDFKSFNKACKKITIPQTPSRSPSPICMPRSPSPLIETTESIKPVYPRPKKNPDVRQNALAVFEFSTVYPFVYGNNKFKCFICSQPFLDLPLLKDHMSENHTFAPLKRLLNNRRENVLKVDVSDITCKICSAKPTDLLQLKHHLKEAHSKSVNLDINDNLIPFKLELVDGSYKCVICEENFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCNKVFSTPYKRTLHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCAVCMQRFCNKESLKRHMVIHTGEKKHKCDVCGMAFLRRKNLKDHMRLHNGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00822235;
90% Identity: -
80% Identity: -