Basic Information

Insect: Lithosia quadra
Gene Symbol: -
Assembly: GCA_963576445.1
Location: OY754883.1:2966272-2975196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00046 0.031 15.2 0.2 2 23 144 165 143 165 0.93

2 11 0.00066 0.044 14.7 2.4 1 23 171 193 171 193 0.96

3 11 4.6e-05 0.0031 18.4 0.3 1 23 283 305 283 305 0.98

4 11 1.8 1.2e+02 3.9 0.5 2 23 312 334 311 334 0.92

5 11 0.00069 0.046 14.7 0.0 3 23 387 408 385 408 0.90

6 11 0.00014 0.0096 16.8 0.2 1 23 422 444 422 444 0.96

7 11 1.6e-05 0.0011 19.8 0.2 1 23 480 502 480 502 0.98

8 11 0.00071 0.048 14.6 0.2 1 23 508 530 508 530 0.97

9 11 0.0004 0.027 15.4 0.3 1 23 536 558 536 559 0.95

10 11 0.052 3.5 8.8 2.4 1 23 572 594 572 594 0.96

11 11 0.0053 0.36 11.9 0.1 1 20 741 760 741 763 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00046	0.031	15.2	0.2	2	23	144	165	143	165	0.93
2	11	0.00066	0.044	14.7	2.4	1	23	171	193	171	193	0.96
3	11	4.6e-05	0.0031	18.4	0.3	1	23	283	305	283	305	0.98
4	11	1.8	1.2e+02	3.9	0.5	2	23	312	334	311	334	0.92
5	11	0.00069	0.046	14.7	0.0	3	23	387	408	385	408	0.90
6	11	0.00014	0.0096	16.8	0.2	1	23	422	444	422	444	0.96
7	11	1.6e-05	0.0011	19.8	0.2	1	23	480	502	480	502	0.98
8	11	0.00071	0.048	14.6	0.2	1	23	508	530	508	530	0.97
9	11	0.0004	0.027	15.4	0.3	1	23	536	558	536	559	0.95
10	11	0.052	3.5	8.8	2.4	1	23	572	594	572	594	0.96
11	11	0.0053	0.36	11.9	0.1	1	20	741	760	741	763	0.93

Sequence Information

Coding Sequence: ATGGATGGGGAAGGAGTAGACTTCAACCTCCATTGGGAGGAGGAAGTTGTAGTAaagCATGATCCGCATGAAGTTGTAACAGAAGAGGTGATATCTGGTCTCGAGAATGTACAAAGTAGCTCATACTCCAACATGACACAAGAAGATATAATAGCTAACACAGACCAAATGGCCGCAGAGAACTTGATGTACCTATCACAAGATGTAATGGGAGGGTATACGGAGACAGCTGAGCTAGCTGACGATCCAAATGTCGAGTGTGTCACGGAGGAAGTCATCACAGATGATTGGGTCATAACTGGAGGACAAGAGAGAGTGGAAGTTCCCATGGACCATCTGACACAACCCCTCTTAGAtgtaaaagaagaaaatgatCTTGATGTGCCTTTACCGACTGATCAaGACGAATACGCAGCAAATCGACCATGGCCGTGCGACTTTTGCTCACGGCGGTTTCGCAAGAAAGCTGCCCTCATGAATCATATGGTGGCCCATCAGAATGACAGGCCACACGCCTGTAATCTCTGTGGCGTGCGATACGTGCGCAAGTGCGATCTCATGAACCATCTCAAAGTGCATGCATATGTACCAGATAACACTGATTCCATAGACTATGAACTTTTAGACCATAATCAAGTTGTTAAACCAAAGAAAAAGCGGGGTCGTCGGAAAAAGAATCCTGAGCCAGTAGAGAATGGTGTATGGGAGAATATGACGTCAGCGCGGACGCAGCAGTGGTCGCGACGCGCTCGGTCTCCTCCCAAACCGCCCGCCACGCCGCCCTCACCACCCTCTGAACCTTCTCCGCCCTCCCCACCGCCACCCCCAGCAGACCCCTCCAGGCCGTTCGTATGCAGGCATTGTGGTATCGGCTTCGCCAGAGAAAAAGCGCTGCAGTCGCATGCTAGGGTACACGGAGGGGATTCCCCGATAGAGTGCGGTACGTGTGGCGAGCTGTGCTGGTCCCGCGAGTCGCTGAACGCGCACACGCAGCAGCGACACCCGCACCTGCCTCCCAAGACTGAGGAGCAGCACCCAGACTACGATGACTCGGACTCAGATGACGACATGGACTTCCGTCTGTCTCCGTTGTCTCATGGCGGCAGCGCGGGGCCGGAGCGAGCCGTGTACGACACGATACGAGGCCCTGAGCTCTTCTGCCAGGACTGCGGGGTCGCCTTCCAGAGGGCTGATTTACTGCGGAGACATGTCGCCGCCGCACACAGCTACAAGCGGCACGACAGCTCGGGCGCGTGGGGCTCGCACACGTGCGACACGTGCGGCGAGAGCTTCAGCGACGCGCTGCAGCTGCTGGCGCACGCCGAGAGCCACGCCGAGCGACACCGCGCGCCCTCGCTCTCCACGCAGCCCACGCCGCGGTTAAAGAGAACGTCGAGAGGTCGAAACAATACGTCGATATCGAATAGTTCCAGACAATTTCCCTGCAGAGTTTGTGGCAAAGTCTTCGGGTCCAGGAGTTCCCAGCAAATCCACATACGAATACACACGGGCGAGCGGCCGTACGCGTGTCGGTTTTGTTGGAAAGCGTTCGCTGATGGTGGCACTTTGCGGAAGCATGAACGCATACATACAGGCGAGAAGCCTTACGCGTGTGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTCGTCCTGCGCGAGCACGTGCGCTCGCACCACTCCGCCCCGGACCGCCGAGCCAACGGGGGTCCAGCTTATTGCTGTGTAGTGTGCAGCCGGACGCTCCACTCTAGTTCTGAACTCGTCCAACATTTGATCCAACATTGCGATGCCAACACTGCACTAAAGAGACAACCACAGGCGGGACCACGAAAATATAAACGACGACGGAAATTGAAAGCCGACCAGTCTCCACCGTCGGCGCGAGATTGGCCTCACTCCCCCACTCCGCCGCCCGCGTCTCGGTCACCTTCGCCCCTGTCCGAGCTGGAGGCGCCCGTCACGCCCCCCTCCCCCGCGTCCCCGGCGCGTCGCCGCCGCCGTCGCGCTTCGCCCCCTCCTCGACCGCGCATGATCCACACTGAAGAGCGACCACGCACGCGTCGAGGCGAAGGGGGCGGAGGCCGCGGCCGAGGTCGCCAACGCCGTCCTCCCCGCCGCCCCGCTGATGATCTACGCGCCATTCGGCCTCGAGATTCCACCGGTGAACTACGCTCCTCTAGACGAGACCCCGCTAGTCCCGAGCCGGAGTTAGGCGCCCCTTTCAAGTGTGAGATGTGTTCTCTAGAGTTCCCGCGTCGCGATGATCTGTTACTACACGTACCGGTACATATTTGA
Protein Sequence: MDGEGVDFNLHWEEEVVVKHDPHEVVTEEVISGLENVQSSSYSNMTQEDIIANTDQMAAENLMYLSQDVMGGYTETAELADDPNVECVTEEVITDDWVITGGQERVEVPMDHLTQPLLDVKEENDLDVPLPTDQDEYAANRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNTDSIDYELLDHNQVVKPKKKRGRRKKNPEPVENGVWENMTSARTQQWSRRARSPPKPPATPPSPPSEPSPPSPPPPPADPSRPFVCRHCGIGFAREKALQSHARVHGGDSPIECGTCGELCWSRESLNAHTQQRHPHLPPKTEEQHPDYDDSDSDDDMDFRLSPLSHGGSAGPERAVYDTIRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSGAWGSHTCDTCGESFSDALQLLAHAESHAERHRAPSLSTQPTPRLKRTSRGRNNTSISNSSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCSRTLHSSSELVQHLIQHCDANTALKRQPQAGPRKYKRRRKLKADQSPPSARDWPHSPTPPPASRSPSPLSELEAPVTPPSPASPARRRRRRASPPPRPRMIHTEERPRTRRGEGGGGRGRGRQRRPPRRPADDLRAIRPRDSTGELRSSRRDPASPEPELGAPFKCEMCSLEFPRRDDLLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00157451;
90% Identity: iTF_00405286; iTF_00636782; iTF_00637999;
80% Identity: -