Lqua019596.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754897.1:1084399-1087022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00042 0.028 15.3 0.8 3 23 84 105 82 105 0.91 2 19 0.11 7.1 7.8 0.1 2 23 131 153 130 153 0.94 3 19 0.0018 0.12 13.4 0.4 2 23 176 197 175 197 0.97 4 19 0.23 16 6.7 0.6 1 23 201 223 201 223 0.87 5 19 0.0013 0.087 13.8 1.6 1 23 228 251 228 251 0.96 6 19 0.15 9.8 7.3 0.7 2 23 259 281 258 281 0.94 7 19 0.00038 0.025 15.5 1.9 2 23 289 311 288 311 0.96 8 19 0.00028 0.019 15.9 3.4 1 23 317 339 317 339 0.98 9 19 5.3e-06 0.00035 21.3 0.6 1 23 345 367 345 367 0.99 10 19 0.0043 0.29 12.2 0.2 3 23 440 461 438 461 0.90 11 19 0.0017 0.12 13.4 2.7 2 23 485 507 484 507 0.95 12 19 0.087 5.8 8.1 1.9 2 23 529 550 528 550 0.96 13 19 0.33 22 6.2 2.0 1 23 554 576 554 576 0.97 14 19 0.87 58 4.9 1.9 1 11 581 591 581 604 0.88 15 19 0.038 2.6 9.2 0.9 2 23 612 634 611 634 0.92 16 19 0.00013 0.009 16.9 1.2 2 23 642 664 641 664 0.96 17 19 0.00055 0.037 15.0 3.0 1 23 670 692 670 692 0.98 18 19 8.2e-05 0.0055 17.6 6.7 1 23 698 720 698 720 0.99 19 19 2.4e-06 0.00016 22.4 0.2 1 23 726 749 726 749 0.95
Sequence Information
- Coding Sequence
- ATGCTCAAGGTGTATAAGAAACCAGAACAAAAATGTCTCGGACGGGGAACTAGAGTTATACGAATAGAAAGACCTACAAAATCGACCTTCGAACTGAAGTTAATTTCAAAGAGATCCACGGGCGGCGATAGTGCCTTAAAGGATCCCGCTTCAGAAACAGCCAAATCTAAGGACAGACAGAATTTGACGCACATACTACTGCACTCTAACGCCAATCCAATCCGCTCAAAAGATAGCATAGGCTACGGCTGCACATTTTGCCCAAAAAAGTTCCCAAAACCCACAAACCTGAAGAAGCATTTCCTCGAGGAGCACAACAATGACAAACTAATAAGATCCATGACCGCAAAAATGTTAGAACACGTCATTAAGCTCGATATAACATGTCTAAATTGCGCTCTTTGCGACAAAGATATTGCAAGACTCGACGACTTTATATCTCATTTAAAAAATGAACACGGAAAGAAAATGTATGAGGACGCAAAAAACCATATCGTCCCTTTCATATTCGATACACCAGAACTAAGATGCGCTATATGTTCCACAGAGTTTGGCACATTCAAATTGTTGCAGGAGCATATGAATTCTCACTTTGCTAATTATATGTGTGATATATGTGGTGCCGGCTTCGTAACTGCCCGGCTTAGAATGTGCCACGTAAAGCGTCATAGCAGCGGTGAATTCAATTGTGGACAGTGTGGCAAAACCTTCGACAGTCCGCGCAAAAGGCGCGAACATCAAAGTAGAACTCATCTAGGATTTGGTGCGAGGAACAAATGTAAATTTTGTCCAGAAAGATTTGTGGATTATTGGAAAAAAGTTACTCATATGGTCAAAGAACATGGAGAGCCTCCTATAGTCCTAAAGTGTTCGGCTTGCGATCGAACATTTAATAATCAGAGGTCGTTATCAAGCCATACGAAGAAAGATCACCTTCTGGAGCGAAGGCACAAGTGCAACGAGTGTGACAtgaaattttattggaaaagcAGTCTACAAAAACACATGGCCAAACATACTGGACTAAGGCAATACAAATGCGATGTTTGTTTGAAAGCGTACGCACGAAAAAATACTCTCAGGGAACATATGAGGATACACGCTAATGATAAAAGATTTGCATGCACACATTGTGTACCACGGAAAACGAAAGTAAAAGGCGAAGATTTATTCACCACAAACGAAGAATCAAATAAGGAGGAAGATACTCTCGAAAAACCCCAAAAGAAATCGAAAAGGACATCAGACACATTGAAAATCATTCTTCAATATTCCAACGCTAATTTAATAAGGAATAAAGACAGCGATGGATACGGTTGCAACTTCTGCCCTAAAAAATTCGTGGAACCAGACAAATTAAAAGCACATTCCCTAGAAGAGCATTCTAATATAGAGGCTCTACGAATGCCAAAACCGTTTCAGTATATAATTAAAGTCGACATAACTGATTTAAAGTGTAAAATTTGTGAAAAGAAATGTACTAAATTAGACGATTTGCTCACACATTTAAAAGAACAACACGATAAGAGAACAATCACAGATATTTCAGATATTATACCCTTTAAATTCGACTCTGAAGAATTAAAATGCGCTATATGCGATACAAAATACTCAACATTCAAGATATTACAAGAGCATATGCACCAGCATTTTAGAAATTACATTTGTGAGATCTGCTGCTCTGGTTTCATTACTAAGCGGTTACTAGTTCGACACAAAAGTAGGCATGAGCAAGGAGAATTCAAATGCAGTAATTGCGAAAAAACATTTGCTTGCGACCAAAAAAGGAGGGATCACGAGCAGAGAATGCATCTAGGGTTAAAAAAGAGAAACAAATGCAAACTTTGTGATGAAAAATTTGATGATTACTGGACGAAAATGCGCCATATGGTCGAGAAACATGGTGCTCCACCAATAGCTTTAAAATGTACAGCTTGTGAGCGCACATTCAGCAATAGAAGGTCTTTAGCTCGACACGTTAAAAAGGATCATTTGATGGAAAGAGAACACGTGTGTAGTATATGTGACATGCAGTTTTTCTTGAAGCATTATTTGGAGGAACACATGAGAGTGCACACTGGGGTCAAAAAATTCCAGTGCCACGTGTGTACGAAGCATTATGCGTCTAAGAAATCATTGCGGCAGCACTTGCGGTCACATGCAGACGATAGAAAGTTTGCTTGCAATATTTGTGGACTGGCATTCGTACAGCGAAGTACATTGAAAAGTCATATTAGAGCTAAGCATGGATAA
- Protein Sequence
- MLKVYKKPEQKCLGRGTRVIRIERPTKSTFELKLISKRSTGGDSALKDPASETAKSKDRQNLTHILLHSNANPIRSKDSIGYGCTFCPKKFPKPTNLKKHFLEEHNNDKLIRSMTAKMLEHVIKLDITCLNCALCDKDIARLDDFISHLKNEHGKKMYEDAKNHIVPFIFDTPELRCAICSTEFGTFKLLQEHMNSHFANYMCDICGAGFVTARLRMCHVKRHSSGEFNCGQCGKTFDSPRKRREHQSRTHLGFGARNKCKFCPERFVDYWKKVTHMVKEHGEPPIVLKCSACDRTFNNQRSLSSHTKKDHLLERRHKCNECDMKFYWKSSLQKHMAKHTGLRQYKCDVCLKAYARKNTLREHMRIHANDKRFACTHCVPRKTKVKGEDLFTTNEESNKEEDTLEKPQKKSKRTSDTLKIILQYSNANLIRNKDSDGYGCNFCPKKFVEPDKLKAHSLEEHSNIEALRMPKPFQYIIKVDITDLKCKICEKKCTKLDDLLTHLKEQHDKRTITDISDIIPFKFDSEELKCAICDTKYSTFKILQEHMHQHFRNYICEICCSGFITKRLLVRHKSRHEQGEFKCSNCEKTFACDQKRRDHEQRMHLGLKKRNKCKLCDEKFDDYWTKMRHMVEKHGAPPIALKCTACERTFSNRRSLARHVKKDHLMEREHVCSICDMQFFLKHYLEEHMRVHTGVKKFQCHVCTKHYASKKSLRQHLRSHADDRKFACNICGLAFVQRSTLKSHIRAKHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405258;
- 90% Identity
- -
- 80% Identity
- -