Cmes030377.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000970.1:134176-136714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0011 0.22 14.0 0.5 3 23 82 103 80 103 0.91 2 20 0.4 80 5.9 0.1 2 23 129 151 128 151 0.94 3 20 0.0018 0.36 13.3 0.4 2 23 174 195 173 195 0.97 4 20 1.2 2.4e+02 4.4 1.1 1 12 199 210 199 221 0.79 5 20 6.9e-05 0.014 17.8 3.0 1 23 226 249 226 249 0.98 6 20 0.24 47 6.6 1.1 2 23 257 279 256 279 0.94 7 20 0.00018 0.036 16.4 1.8 2 23 287 309 286 309 0.96 8 20 3.4e-05 0.0068 18.7 3.3 1 23 315 337 315 337 0.98 9 20 7e-06 0.0014 20.9 0.7 1 23 343 365 343 365 0.99 10 20 9.9e-05 0.02 17.3 4.4 1 23 371 394 371 394 0.97 11 20 0.0053 1.1 11.8 0.2 3 23 473 494 471 494 0.90 12 20 0.01 2.1 10.9 1.0 2 23 518 540 517 540 0.94 13 20 0.041 8.2 9.0 1.9 2 23 562 583 561 583 0.97 14 20 0.33 66 6.2 2.0 1 23 587 609 587 609 0.97 15 20 0.18 36 7.0 2.0 1 11 614 624 614 637 0.88 16 20 0.082 16 8.1 1.2 2 23 645 667 644 667 0.90 17 20 0.00014 0.027 16.8 1.2 2 23 675 697 674 697 0.96 18 20 0.00056 0.11 14.9 3.0 1 23 703 725 703 725 0.98 19 20 8.3e-05 0.016 17.5 6.7 1 23 731 753 731 753 0.99 20 20 4.9e-06 0.00097 21.4 0.3 1 23 759 782 759 782 0.95
Sequence Information
- Coding Sequence
- ATGAATAATACGACATTTCTTTTTGTAGGTCCCGGACGGGGAACTAGAATAATCCGAATAGAAAGACCCACAAAATCGACTGTCGAACTGAAGTTTATATCAAAAAGATCCACGAGCGGCGATAGTGCTCTAGAGGGTCCCGGTTCAGAAACAGCCAAATCTAAGAACAGGCTGAATTTGACGCACATTCTACTCAATTCTAACGCCAATCCAATACGCTCTAAGGACAGCATAGGATACGGCTGCACATTTTGCCCCAAAAAGTTCCCAATGCCCACAAACCTAAAGAAGCATTTCCTCGAAGAGCACAATAGTGATAAATTAATAAGATGCATGACTGCGAAAATGTTAGAACACGTCATTAAGCTCGATATAACATACCTAAATTGCGCTCTATGTGACAAAGATATCGCGAAACTTGACGATTTTATAtctcatttaaaaaatgaaCACGGAAAGAAGATGTTCGAGGACGCAAAAAATCATATCCTTCCCTTCATATTCGATACACCAGAACTAAGATGTGCTATATGTTCCACAGAGTTTGGTACATTTAAACTGTTACAGGAACACATGAATTCTCACTTTGCGAATTATATGTGTAAAATATGTGGCGCTGGCTTCGTAACAGATAGGCTTAGAATGTGCCACGAAAAGCGTCATAGCAGCGGTGAGTTCAAATGTAGTCAGTGTGGCAAGACGTTCGACAGTCCGCGCAAAAGACGCGAGCATCAAAGAAGAACTCATCTCGGATTTAGTGCGAGGAACAAATGTAAATTTTGCTCAGAGAGATTTGTTGattattggaaaaaaataacacatatggTCAAAGAACACGGGGTACCTCCTGTTGTCTTGAAGTGTTCGGCTTGCGATCGAACCTTTGATAACCAGAGATCATTGTCGCGCCACACAAAGAAAGATCACCTTTTGGAGCGACGGCACAAGTGCAGCGAGTGTGATATGAGATTTTTTGGCAAAAGCAGTCTACAAAAACACATGGCGAAACATACCGGTCTGAGACAATTCAAATGCGACGTTTGTCTCAAAGCGTATGCACGTAAAAATACTCTGAAGGAACATATGAGGATACACGCTAATGATAGAAGATTTGCATGTACGCATTGTGGTCAAGCTTTTGTGCAGAAGTGCAGTTGGCGAAGTCATATGCGTTCAAAGCATGGGGAGATAAAAGATGTTTGCTCTCCTTTAACCGACGAGGAGTTGAAACCCGgTGTACCACGGAAAACCAAAGTAAAAGACGAAGATCTCACAACAAACGAAGAATCCAAGAAGGAGCAAGACACACTCGAAAAACCTCAGAAGAAATCTAAAAGGACATCGGATACTTTGAAAATCATTCTTCAATATTCTAACGCAAATTTAATAAGGAATAAAGACAGCGATGGATACGGTTGCAACTTTTGCCCGAAAAAATTTATAGAACCGGATAAATTAAAAGCACATTCTCTGGAAGAACATTCCAATATACAGGCTCTTCAAATGCCGAAACCGtttcaatatataattaaaGTAGACATAACAGACTTAATGTGTAATATTTGTGAAAAGAAATGTCCCAAACTGGACGATTTCCTCGCACACTTAAAGGAGCAACATGATAAGAGAATGATCACAGATATTTCAGACATCATACCCTTCAAATTCGACACTGAAGAATTGCAATGCGCTATATGCGATACAAAATATTCTACATTCAAGATATTACAAGAGCATATGCATAAACATTTCAGGAATTACATTTGTGAGATTTGCTGCTCCGGGTTCATCACTAAGCGGTTGCTAGTTCGACACAAAAGTAGGCATGAGCAGGGAGAATTCAAATGCAATAATTGTGACAAAACATTTGTATGCGACCAAAAAAGGAGAGATCACGAGCAGAGAATGCATCTAGGGTTAAAAAAGAGAAATAAATGCAAACTCTGTAATGAAAAATTTGACGACTACTGGACAAAAATGCGCCACATGGTTGACAAACACGGTGCTCCACCAATAGCTTTGAAATGTACAGCTTGTGAGCGTACATTTAGTAACAGAAGATCTTTAGCACGACATGTTAAAAAGGATCATTTGATGGAAAGAGAACACGTGTGCAGTATATGTGATATGCAGTTCTTCTTAAAGCATTATTTGGAGGAACACATGAGAGTGCATACTGGTGTCAAAAAATTCCAATGCCACGTGTGTACGAAGCACTATGCTTCTAAGAAGTCATTGCGGCAGCACTTGCGATCACACGCTGATGATAGGAAGTTTGCGTGCAATATGTGTGGACTAGCATTCGTACAGCGAAGCACATTGAAAAGTCATATTAGAGCTAAGCATGGAGAATAG
- Protein Sequence
- MNNTTFLFVGPGRGTRIIRIERPTKSTVELKFISKRSTSGDSALEGPGSETAKSKNRLNLTHILLNSNANPIRSKDSIGYGCTFCPKKFPMPTNLKKHFLEEHNSDKLIRCMTAKMLEHVIKLDITYLNCALCDKDIAKLDDFISHLKNEHGKKMFEDAKNHILPFIFDTPELRCAICSTEFGTFKLLQEHMNSHFANYMCKICGAGFVTDRLRMCHEKRHSSGEFKCSQCGKTFDSPRKRREHQRRTHLGFSARNKCKFCSERFVDYWKKITHMVKEHGVPPVVLKCSACDRTFDNQRSLSRHTKKDHLLERRHKCSECDMRFFGKSSLQKHMAKHTGLRQFKCDVCLKAYARKNTLKEHMRIHANDRRFACTHCGQAFVQKCSWRSHMRSKHGEIKDVCSPLTDEELKPGVPRKTKVKDEDLTTNEESKKEQDTLEKPQKKSKRTSDTLKIILQYSNANLIRNKDSDGYGCNFCPKKFIEPDKLKAHSLEEHSNIQALQMPKPFQYIIKVDITDLMCNICEKKCPKLDDFLAHLKEQHDKRMITDISDIIPFKFDTEELQCAICDTKYSTFKILQEHMHKHFRNYICEICCSGFITKRLLVRHKSRHEQGEFKCNNCDKTFVCDQKRRDHEQRMHLGLKKRNKCKLCNEKFDDYWTKMRHMVDKHGAPPIALKCTACERTFSNRRSLARHVKKDHLMEREHVCSICDMQFFLKHYLEEHMRVHTGVKKFQCHVCTKHYASKKSLRQHLRSHADDRKFACNMCGLAFVQRSTLKSHIRAKHGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909076;
- 90% Identity
- -
- 80% Identity
- -