Lqua008072.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754882.1:1461578-1461949[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 6.9e-05 23.0 0.0 4 39 18 53 15 58 0.79
Sequence Information
- Coding Sequence
- ATGCCAAGAAATCGTCACAGGACCACCGCTAAAGCGGCTTGGACCGAAGAAGACCTTCAATCTGCTAAAACAGTGATTGAAGGAGGTTTGTTCAAAAGAAAAGCCGCAAAACAATTTAACATACCATTTAATACGTTGAGAGATCGACTGAAACATGAAAATTTGAGTAACCCAAGACTAGGTCGCGAGCCCGTTTTTAACCAACAGCAAGAAACTGAAATTGCTGAAGAAGTTAAGTTGTTGGGCGTTACCCCATACCCTGAGCGGCATTACCCAACGCCAGGGGCAATGCCGctcaaacatgtttttttttataattttgcctTACTACTGAAAGGTCAAAGATATATGCTTTTGTTGTTAAATGGTTGA
- Protein Sequence
- MPRNRHRTTAKAAWTEEDLQSAKTVIEGGLFKRKAAKQFNIPFNTLRDRLKHENLSNPRLGREPVFNQQQETEIAEEVKLLGVTPYPERHYPTPGAMPLKHVFFYNFALLLKGQRYMLLLLNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908769; iTF_00908773; iTF_00908774; iTF_00908776; iTF_00908777; iTF_00908778; iTF_00908779; iTF_00908780; iTF_00908781; iTF_00908755; iTF_00908765; iTF_00908766;
- 90% Identity
- iTF_00908773; iTF_00908774; iTF_00908769; iTF_00908776; iTF_00908777; iTF_00908778; iTF_00908779; iTF_00908780; iTF_00908781; iTF_00908755; iTF_00908765; iTF_00908766;
- 80% Identity
- -