Lqua009005.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754883.1:5697087-5697419[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-08 1.4e-05 25.2 0.0 3 41 17 55 15 59 0.79
Sequence Information
- Coding Sequence
- ATGCCAAGAAATCGCCACAGGACCACCGCTAAAGCGGCTTGGACCGAAGAAGACCTTCAATCTGCTAAAACAGTGATTGAAGGAGGTTTGTTCAAAAGAAAAGCCGCAAAACAATTTAACATACCATTTACTACGTTAAGAGATCGACTGAAACATGAAAATATGAGTAACCCAAGACTAGGTCGCGAGCCCGTTTTTACCCAACAGCAAGAAACTGAAATTGCTGAAGAAGTTAAGTTGTTGGGCGTTACCCCATACCCTGAGCGGCATTACCCAACGCCAGGGGCAATGCCGctcaaacatgttttttttataatgttgccTTACTACTAA
- Protein Sequence
- MPRNRHRTTAKAAWTEEDLQSAKTVIEGGLFKRKAAKQFNIPFTTLRDRLKHENMSNPRLGREPVFTQQQETEIAEEVKLLGVTPYPERHYPTPGAMPLKHVFFIMLPYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908787;
- 90% Identity
- iTF_00908787;
- 80% Identity
- iTF_00908779; iTF_00908780;