Lqua016050.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754892.1:5900128-5902563[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-12 1.2e-09 38.2 0.0 2 37 12 46 11 52 0.91
Sequence Information
- Coding Sequence
- ATGTCTCTTTCAAGACCCATATTACAGTACCCCGAAGAAAAATTAACCCAAGCTTTAAATGCTATAAGAAATGGGATGACAATCAGGGAAGCCAGCAGAACTCATGGCGTTCCCCGAGGTACACTTCAAGATAGAATTCATCTTCGAGTTCCTGAGGGTCCTAGAAGAATGGGTCCCGAATCCATTCTCAACAAATATGAAGAAGCCGAAATTGCAACCTGGCTTAAAGATCTGGCAACTTGCGGGTTTCCCAAAAAACCAGACAACCTACTGAATTCTGTTCAACAAATGATGATCGAAGATGGCAGGCCCAACCCTTTCATAAACGGAAGACCAGGTAAGAAATGgatgaattctttttttaaacggaACGAATCAATTTCTATGAGAACACCTGAAGCGATTTCAAAGGGAAGAGCAGTAATCACCGAAGAGAGTATTAGGAAATGGTTCGAAAAACTTAAAGACTATCTCACTCAAAATCAAGCACTCGATGTGTTAGAAGACCCTAAAAGAATTTTAAATGGTGATGAAACTAGTTTCATGCTTTGCCCTAAAACAGGAAAAGTGATAGCACCCCGAGGGTATAAAAATGTGTACCAAATAGTAcaaggaaaagaaaaagaggcAGTCACTGTTTTAGCATTTTTTTCTGCAACGGGTGATATTTTACCCCCATGTGTAGTTTTTCCGTACATCAGACCACCCAAAAATGTAATAGATAGCATGCCAGATGATTGGTTCCTTGGTAAATCTgacacaggttggatgaaaGCGGATATTTTCTATGATTATATAACTAAATGCCTAACCAAATGGATACAAGACAATGAAGTGAAAAAGCCGGTGCTTGTTTTCGTCGATGGTCACAAAACTCACATGACTATGAAACTCAGTAAATTTTGtcatgacaataaaattatcttgtaCGCACTTCCACCTAATACAACACATCTGATGCAACCAGCTGATGTAAGCGTTTTTAAACCACTAAAATCTGAATGGGCGGCTACTGTTCATAACTGGTGTTCACAGCCAGAAAACATTAACACTGTACTGACAAAAACTACTTTCTGCCCATTGCTTAATAAAGTATTAAGTAAAGAAACTCTAAAAGAGTCTATCAAAAATGGTTTTCGTAAGTGTGGCCTCTATCCGTTTGATCCATGTGCTGTAGATTACACTAAATGCGTGCAAAATATCTTAGAGAACAGAAAGAATAATGGTTCTAAGCAAACACCATCAAAGAAATTGAAGAAAAGAGACTTTAATATTGCATCACAAGTTATAAAACATTTAGACAGAGATTTGACTGCAAGAGGCATTGATGTGAACATTCTACTGGATGTCGTGGAAAATGCAAAACTCACCCAAGGCTTAAATGATTCAGTAAGAAGCGAAAGTGCGAGAGTAGAGGTTGAgaataaggaaaaaataatGATGGTTGAGAAAAGAACAGAACCACGTGCGACAAATAACGACAAATTTTGTATGATTGACGAAATTGAAAAAAGTGGAGTTGAAGAAGGATTCTACGTGTTTATAACTGAAGATGACAATAATTGcccaaaaaatactgaaattgaAAGTGAGATAATTCAGCaggataataaagaaaataacatcattgaaataaattcaacGCAACCTGAGACAGCACTAGATAGTAGTAACTTAAATAATCTAATACTTGGCGATCTCACCTTTGATAATAACAATTTGTTGGATGATGACATTAATCTAGGATCATTTGAAGTTAATGACAgtttaatattagtacctataaataacaATACTCTGATCCGAGAAAATGAACTTCATGATGACAAAATACAGACAGATTCTATTATACAAGTTAAGTCTCCAAAAGTATCACCTTTTGTTCGAAAACATCTTATTATACCATCACCAATAAAGAAATCTACCACTCCTAGAGTCATGAACAGAATTGGCGCAATTTCTTCTAAAGAATGGAGACAATTTGAAATGTCTAAAAAAGAAgagaaacaaaaaaagaaaaatgctattcaggaaaggaagttacagaggcaaaaaattaaagaagaaaaacagaaacaaaaaactgaaaaaaaaacaaaaaaaactgctcTAAATTCTACCAAAAGTAAAGTGAAGGAAActacaaagaagaaaaatgatgattctaaccaggaattgagagtaaaatgcacaaagaaaaggaaattggaagatttgaatGACATAAATGAAGAAGCAGAGAAGGCTGGCTGTGATTTAGtggaaattaaacaaaataaaattaaaattctcagtaacatacttctGTCATCTGgatctcctgaaacagaaacctatAAGGAAGAGAaacttctgcaaaaaattgttaatcgccgagaaACTTTTAGAAATGAAAAAGAActtgaaaactttttaaatactgatattactgaataa
- Protein Sequence
- MSLSRPILQYPEEKLTQALNAIRNGMTIREASRTHGVPRGTLQDRIHLRVPEGPRRMGPESILNKYEEAEIATWLKDLATCGFPKKPDNLLNSVQQMMIEDGRPNPFINGRPGKKWMNSFFKRNESISMRTPEAISKGRAVITEESIRKWFEKLKDYLTQNQALDVLEDPKRILNGDETSFMLCPKTGKVIAPRGYKNVYQIVQGKEKEAVTVLAFFSATGDILPPCVVFPYIRPPKNVIDSMPDDWFLGKSDTGWMKADIFYDYITKCLTKWIQDNEVKKPVLVFVDGHKTHMTMKLSKFCHDNKIILYALPPNTTHLMQPADVSVFKPLKSEWAATVHNWCSQPENINTVLTKTTFCPLLNKVLSKETLKESIKNGFRKCGLYPFDPCAVDYTKCVQNILENRKNNGSKQTPSKKLKKRDFNIASQVIKHLDRDLTARGIDVNILLDVVENAKLTQGLNDSVRSESARVEVENKEKIMMVEKRTEPRATNNDKFCMIDEIEKSGVEEGFYVFITEDDNNCPKNTEIESEIIQQDNKENNIIEINSTQPETALDSSNLNNLILGDLTFDNNNLLDDDINLGSFEVNDSLILVPINNNTLIRENELHDDKIQTDSIIQVKSPKVSPFVRKHLIIPSPIKKSTTPRVMNRIGAISSKEWRQFEMSKKEEKQKKKNAIQERKLQRQKIKEEKQKQKTEKKTKKTALNSTKSKVKETTKKKNDDSNQELRVKCTKKRKLEDLNDINEEAEKAGCDLVEIKQNKIKILSNILLSSGSPETETYKEEKLLQKIVNRRETFRNEKELENFLNTDITE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01124533; iTF_01125397; iTF_01125398; iTF_01338524; iTF_01338526; iTF_01178346; iTF_01178351; iTF_01178352; iTF_01178355; iTF_01178356; iTF_01178360; iTF_01178361; iTF_01178367; iTF_00205988; iTF_00205987; iTF_01125396; iTF_01178357; iTF_01178358; iTF_01178359; iTF_01339968;
- 90% Identity
- -
- 80% Identity
- -