Lsem005105.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- -
- Assembly
- GCA_947363905.1
- Location
- OX376214.1:10850163-10852429[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0011 27 5.5 0.0 13 45 167 201 160 206 0.71 2 4 0.00093 23 5.7 0.1 22 51 288 317 280 319 0.88 3 4 1.5e-05 0.37 11.4 0.0 21 46 370 395 364 401 0.90 4 4 0.015 3.8e+02 1.8 0.1 19 44 453 478 442 485 0.81
Sequence Information
- Coding Sequence
- ATGGCGAGTAGAATACAATTTGAAGATGAAATTGTTGACGAAAATATAAATAAAACGAGTGGACCTGAATATGGAGAAATAACATTAAAGGAAGAAGGTCCATCAGGTCTCTGCAGTCTAGATCCTATTCAAGGAACACAAATCCATGATCTTACAGAAACTAATTCTGAGACAGTTAACACTGAACCTAGTAGCAGAGATACTAATTCAGCAAAAAATTTTATAATTCTTGGCAGTTGGGTAAAACAAAGTTTTGAAGTTCCAGTTGAGCAAGAGGGTAACATTGCATTGCAAAGTGAGGGTAATGTTACCATAGTTGGAGGGGGTAAGGGTAAGAGGAAGAATAAAACTGAGCTAGAGTTGCTTGGTATAGACATAAAGGAGAATTATGAAGATTTAGATGCTGAATATGATGTGTTTGGAGATGAAAGTAAAATATTTAGAAAGTATAAATTGAGGAAAACTGAGCAACCAATCTCATATAAGGAGCCAGCGGACATTAAACCCAAACGCCGCATCAGTACAGATGATGAAATGGACTTGACCTGCCCTGTTTGCCAGCAAGAGTTAGAAAACAAGATGGGATTACTGAATCACCTCCGAATCCACAATAAAACTGTACATGAATACACCTGCTCACTATGTACAAAGAAGTTTGAGAGAAACGCAGACTTAATTGCGCACAGAGAGAAACATAGCGGAGAGTCTTTTCTCTGCCAGGAATGCAAACTAGCATTTTCAAACTACTGTGATTATTTACTGCACAACTACGAGCATTTGAGTCAAGCACATTTCAAATGCACAGAATGCGGACTGCGCTATCGAAAATCATTCTACAAAAAACACATTATGACACATTTTAAAAAGCCATTGTCCTGCGACTTGTGCTCTTTCGTAGCCAACGGTGAATACAATCTACGGGCTCATATAAATCAGCATAAATACTGTAAATTTGTTTGTGTTGAGTGTGGAAAAGTGTGCAAGTCCAAAAAATATTATGAATATCATATGAGCATACATTCTGGGGTTAAAAGGGTCCAGTGTCTTTACTGCGGAGCATGTTTTCGCAACCAGAACGCGAGGGATGTGCACACTAGAATACACACAGGGGAAAAACCTTTCACATGCGACATCTGTGGGCACAAAGCGCGGCAGTGGACAGATATGAAACGACATAAAGAGACTCATGGCACTGAGAAAAAGTACGCCTGTGATGTCTGTGGGAAAAAATATTTGCACAAAGATTATCTTGCGATTCATATGCGGTCTCATACAAAGAAGTGTTTGTATAAGTGTCCAGAGTGTGATGCTAACTTTGTTGGTGTGGCTGGGTTGAAGACTCATACGATGTACAAGCATACGAGTGAGCGGCCTGTTGAGTGTACACTTTGTGATAAAAAGTTTATTAATAATAATCAATATCGGAAACATTGTAGGGCGAAGTATCATTTAAGAAATGTGTATGGGAATAATATTGATAAAAAGAAAGATGAATGA
- Protein Sequence
- MASRIQFEDEIVDENINKTSGPEYGEITLKEEGPSGLCSLDPIQGTQIHDLTETNSETVNTEPSSRDTNSAKNFIILGSWVKQSFEVPVEQEGNIALQSEGNVTIVGGGKGKRKNKTELELLGIDIKENYEDLDAEYDVFGDESKIFRKYKLRKTEQPISYKEPADIKPKRRISTDDEMDLTCPVCQQELENKMGLLNHLRIHNKTVHEYTCSLCTKKFERNADLIAHREKHSGESFLCQECKLAFSNYCDYLLHNYEHLSQAHFKCTECGLRYRKSFYKKHIMTHFKKPLSCDLCSFVANGEYNLRAHINQHKYCKFVCVECGKVCKSKKYYEYHMSIHSGVKRVQCLYCGACFRNQNARDVHTRIHTGEKPFTCDICGHKARQWTDMKRHKETHGTEKKYACDVCGKKYLHKDYLAIHMRSHTKKCLYKCPECDANFVGVAGLKTHTMYKHTSERPVECTLCDKKFINNNQYRKHCRAKYHLRNVYGNNIDKKKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623438;
- 90% Identity
- iTF_00908189;
- 80% Identity
- iTF_00908203;