Lsem019325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lithophane semibrunnea
Gene Symbol
-
Assembly
GCA_947363905.1
Location
OX376216.1:9633371-9634447[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.9e-09 2.5e-05 24.2 4.0 57 198 76 220 53 240 0.70

Sequence Information

Coding Sequence
ATGTTATCCTGTGTGGCTTGTAACACGGATATTACAGACAATAACTTTATAAAATGTGTACGTTGCAATAAAAGCTACCATATGCTTTGTATTAACTTCTCGCATACAAACACACAGGATCAAGAACCTGCGATTAACTGGGTATGCCCACAATGTCTGAGTAAACAGCCTAGGAGCGATAATTCCAATTTACCCGTGCGTCCATCGACGCCTACATCCATGGCTGACATGACCTTCAATGTCACGCGTCGTAAGATTACCCAAATTAAGCCTGATGCCCTGCAATCATCGAGTCAATCAACAGAATCCCTGCGCTCAGAGATAAGGGATATCATACGTGAAGAAATGCGTAATGCGCTGCAGGACACCATAAGCGAGTTTAAAGTTTCAATTTCTGCTAACTTGAGGGAAATCAATGATCACATAACGGCTTTTAAGGATTCTATGAATTTCTTGAGTGAGGAGTTTGACCAATTAAAGCGTGATAACGTTATATATCGGAATGAAATTAACCAATTAAGGAAGGAGAATGAGATATTACACCAGGAAATGTCCGAGATTAAGGGAAAATTCATACAAATTGATCAACTGTCGCGGGCCTCTAACATTGAAATACAGTGTGTCCCGGAACATAAATCTGAAAACGTAATAAACATCGTTAAGCAAATTGGTCGAACGGTGAGCGTGTCGATTAACGACTGTGAAATACATTATTGTGCAAGAATTGCGAAATTGAATCCGGATAGTACGCGTCCACGGTCCATACTTACCAAATTTAATTCGCCCCGTACCCGTGATTCATTTCTATCTGCTGTCCTGACATATAATAAAAAGAATGTTCAAGACAAATTAAACACCCATGACCTGGGATTCGGAACAAGTCAAAAAATTCCTGTGTATGTCGTTGAGAACCTATCGCCGGAGAATAAACACTTGCATGCTGCAACTCGTAAACGGGCAAAGGAGCTAAAGTACAAATTTGTGTGGGTGCGTGGAGGACGCATCTTTGTGAGAAAGTCTGAAACTACGGATTCAATTTTTATCCGTAACCTTGATATGTTACATAAACTCACGTAA
Protein Sequence
MLSCVACNTDITDNNFIKCVRCNKSYHMLCINFSHTNTQDQEPAINWVCPQCLSKQPRSDNSNLPVRPSTPTSMADMTFNVTRRKITQIKPDALQSSSQSTESLRSEIRDIIREEMRNALQDTISEFKVSISANLREINDHITAFKDSMNFLSEEFDQLKRDNVIYRNEINQLRKENEILHQEMSEIKGKFIQIDQLSRASNIEIQCVPEHKSENVINIVKQIGRTVSVSINDCEIHYCARIAKLNPDSTRPRSILTKFNSPRTRDSFLSAVLTYNKKNVQDKLNTHDLGFGTSQKIPVYVVENLSPENKHLHAATRKRAKELKYKFVWVRGGRIFVRKSETTDSIFIRNLDMLHKLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00111686;
90% Identity
iTF_01063783;
80% Identity
iTF_00907907;