Lsem013027.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- -
- Assembly
- GCA_947363905.1
- Location
- OX376211.1:942008-950921[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-10 1.5e-07 31.4 0.0 5 39 22 56 18 61 0.85
Sequence Information
- Coding Sequence
- atgccgcgaatatataaaaaaaaactcggctcccgtgagtacaaaaattattcagaagcaggtattgaagaagcggttattcaaatagtggaaggaagtttaagcattagaggtgcctctgaaagatataatataccctatgggactctatataataaatacaaagggatgcatgccaaaaaacctggagctcagacagttttctccgagaccgaagaaaagattctgttgaaatcggccgcaaaatgttccgactggggatatcccattacattacttgatctcagattttttgcaaaagcgtatttagataaacaagggcgggttgtcgccaagttcgaaaacaatcttcccggagtggagtgggcttattcccttctccgacggcataagaacgagtactctcaacgagtggcgtctaatattaaaaaagcgagggccaaagtgtcgcctgaaagtttgaatgcatattttgacaatttagcacctcttgttgaaggtctgcccccttcaaacattttcaactatgatgagacaaacatgagcgacgatccaggcaaaaaacaaggtgtctataggcgtggggtaaaatatccggagaaaattatgaattattctaaaagtgccacatcagtgatggtttgcggatctgcagacggtgtcctcttaccaccttacgttatttacaaaagcatccacttgtacgacacgtggaaggagaggggaccacaaggcgcaccatgttgtcagaagatctgttgctcccaaggttcccggtttaataggaccaacagtggttggatagacagcattacttttcgagattggtttcgtagtgcttttttgcctcacgccaaaggtttgtcagggagaaaaatattaattggtgataacctttcgtcgcacattgatgtagatgtgctcaatgaatgcgaacaaaatgacattgactttgtttgtctggtgcctcattccacgcacctttgccggcctttagatgtgggtttttttaggccaatgaaaggtgcttggagaaatgtgcttactaactggaaactacaaaatcctcgtttatcgactgttccaaaagaCACTTTCCCGCGCTTGCTGCAAAAATCACTGGAAAAGATAGATGCAGTGCAAGCAAAGCCTAGTGCACCTTTTGCAGAAATAACTCAAGGAGTTAAAAGGAATTTAATGAGCGCCTTCAAAAGCACTGTCATTTATCCCCTTTCAAGAGAAGCAGTGCTAAAAAGGCTGCCTGTGGATGAGAACGCCGACCCAACCAATGATGTTGAGAGCTGTTTAACGAATTACTTGAAGGAGCAAAGATTTGGCGGTCAGTCAACTACTCCAAGAAGGAGGACACGATTAAATGTTGAGCCAGGTGCCAGCGTATCGACTGCCAACTCAGTAAATGCAGCAGTAGAGAGTGAGGACAACGTTTCTGTTGCTTTCAATTCAGCACCGGAAAATATTGCAGATACGATCAATGTTGACGATCCAACTAATGCAAATGACGAAATGGTCCCTGCAGAAGAAGAAAGCAGTGATTCCAGAAATGACGCTTCTGATGCATATGCTGATTTAGAAATAGTATCTCCCAACAAAACCACAATGAACCAAGTCAGCCGCAGTGTCTCCAGGGTCCTCACCATGGTGGTGCTGATGATGTGCTGGTTCAGCGCCATGGCCTTTAGGAACAGCTCCCGGATCCCTAGCAAGAGACCCAAGATCAACTACCCCGACTTTGATTGA
- Protein Sequence
- MPRIYKKKLGSREYKNYSEAGIEEAVIQIVEGSLSIRGASERYNIPYGTLYNKYKGMHAKKPGAQTVFSETEEKILLKSAAKCSDWGYPITLLDLRFFAKAYLDKQGRVVAKFENNLPGVEWAYSLLRRHKNEYSQRVASNIKKARAKVSPESLNAYFDNLAPLVEGLPPSNIFNYDETNMSDDPGKKQGVYRRGVKYPEKIMNYSKSATSVMVCGSADGVLLPPYVIYKSIHLYDTWKERGPQGAPCCQKICCSQGSRFNRTNSGWIDSITFRDWFRSAFLPHAKGLSGRKILIGDNLSSHIDVDVLNECEQNDIDFVCLVPHSTHLCRPLDVGFFRPMKGAWRNVLTNWKLQNPRLSTVPKDTFPRLLQKSLEKIDAVQAKPSAPFAEITQGVKRNLMSAFKSTVIYPLSREAVLKRLPVDENADPTNDVESCLTNYLKEQRFGGQSTTPRRRTRLNVEPGASVSTANSVNAAVESEDNVSVAFNSAPENIADTINVDDPTNANDEMVPAEEESSDSRNDASDAYADLEIVSPNKTTMNQVSRSVSRVLTMVVLMMCWFSAMAFRNSSRIPSKRPKINYPDFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036565;
- 90% Identity
- iTF_01064574;
- 80% Identity
- -