Alit004150.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424491.1:27956212-27958161[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-11 3.6e-08 34.4 0.0 4 39 21 56 18 61 0.87
Sequence Information
- Coding Sequence
- ATGCCGCGAATTTATGAAAAGAAACTTGGGTCCCGTGAATACAAAAATTATTCACAAGCGCGAATAGACGAAGCGCTTAGTCAAATAGTGGAAGGAAGTTTAAGCATTAGAGGTGCATCGGAAAGATATAATATACCCTATGGAActctttataataaatacaaaggGATGCATGTCAAAAAACCTGGAGCACAGACAGTTTTCTCCGAGACCGAAGAAAAGATTCTGTTGAAATCGGCCGCGAAATGTTCCGACTGGGGATATCCCATTACATTACTTGACCTCAGATTTTTAGCAAAAGCATATTTGGATAAGCAAGGGCGGGTGGTCTCTAAGTTCGAAAACAATCTTCCTGGAGTAGAGTGGGCTTATTCACTTCTCCGGCGACATAAGAACGAGTACTCTCAACGAGTGGCGTCCAACATTAAAAAAGCAAGGGCTAAAGTGTCGCCTGAAAGTTTGAAtgcatattttgacaatttAGCACCTCTTGTTGAAGGTCTGCCGCCATCAAATATTTTCAACTACGATGAGACAAACATGAGCGACGATCCAGGCAAAAAACAAGGTATTTATAGGCGTGGGGTAAAATATCCGGAGAAAATTATGAATTATTCTAAAAGTGCCACATCGGTGATGGTGTGCGGATCTGCGGACGGTGTCCTCTTGCCACCTTACGTTATTTATAAAAGCGTCCACCTGTACGACACATGGAAGGAGGGGGGGCCACAAGGCGCACCATGTTGTCAGAAGATCTGTTGCACCCAAGGTTCTCGGTTTAATAGGACCAACAGTGGTTGGATAGACAACATTACTTTCCGAGATTGGTTTCGTAGTGCTTTTTTGCCTCACGCCAAAAGTttgttaggaaaaaaaaaaataattggtgATAACCTTTCATCGCACATTGATGTAGATGTGCTCAATGAATGCCAACAAAATGACATTGCTTTTGTATGTCTAGTGCCTCATGATAACCTTTCATCGCACATTGATGTAGATGTGCTCAATGAATGCCAACAAAATGACATTGCTTTTGTATGTCTAGTGCCTCATTCTACGCACCTTTGTCAGCCTTTAGATGTGGGTTTTTTTAGGCCAATGAAAAGTGCTTGGAGAAATGTGCTTACTAACTGGAAACTACAAAATCCTCGTTTATCGACTGTTCCAAAAGACACTTTCCCGCGCTTGCTGCAAAAATCACTGGAAAAGATAGATGCAGTGCAAGTAAAGCCTAGTGCACCTTTTGCAGAAATAACTCAAGGAGTTAAAAGGAATTTAATGAGCGCTTTCAAAAGCACTGGCATTTATCCCCTTTCAAGAGAAGCAGTGTTAAAAAGGCTGCCTGTAGATGAGAACGCCGACCCAATCAATGAAGTAGAGAGCTGTTTAACGAATTACTTGAAAGAGCAAAGATTTGGTGGTCAGTCGATTGCTCCAAGAAGGAGGACACGATTAAATGTTGTGCCTGGTGCCAGCGTTTCGACTGCCAACCCTGTGAATGAAGCAGATAGTGAGATCGTTTCTGTTGCTTTCAATTCGGAACCGGAAAATATTGCCAATGACACGATCAGTGTTAACGATCCAACTAATGAAAATCACGAAATAATCCCTGCAGAAGAAGAAAGCAGTGAATCCAGAAATGACGCTTCTGAGGAATATGCTGATTTAGAAATAGGGAGATTTGTCTTGGCAAAGTTCTGGTCACAACGAGGCAAGAAAACTTACAAATATGTTTGTCGCATTATCGATCTGGACCCACTGGTAGTCGAAGGTTTCAAATCTTTgggaaataaaaaagaatttaaattggTTCGCGATGATATATCTGAAATTGAGGCAAATGACATATTAGCCTACCTGCCAAAACCAAAGCCTTTTGAGAGTCAGGATAGTGATGTTGaatgtgtccaatttttttttgacatagatATTGCAgaacttttataa
- Protein Sequence
- MPRIYEKKLGSREYKNYSQARIDEALSQIVEGSLSIRGASERYNIPYGTLYNKYKGMHVKKPGAQTVFSETEEKILLKSAAKCSDWGYPITLLDLRFLAKAYLDKQGRVVSKFENNLPGVEWAYSLLRRHKNEYSQRVASNIKKARAKVSPESLNAYFDNLAPLVEGLPPSNIFNYDETNMSDDPGKKQGIYRRGVKYPEKIMNYSKSATSVMVCGSADGVLLPPYVIYKSVHLYDTWKEGGPQGAPCCQKICCTQGSRFNRTNSGWIDNITFRDWFRSAFLPHAKSLLGKKKIIGDNLSSHIDVDVLNECQQNDIAFVCLVPHDNLSSHIDVDVLNECQQNDIAFVCLVPHSTHLCQPLDVGFFRPMKSAWRNVLTNWKLQNPRLSTVPKDTFPRLLQKSLEKIDAVQVKPSAPFAEITQGVKRNLMSAFKSTGIYPLSREAVLKRLPVDENADPINEVESCLTNYLKEQRFGGQSIAPRRRTRLNVVPGASVSTANPVNEADSEIVSVAFNSEPENIANDTISVNDPTNENHEIIPAEEESSESRNDASEEYADLEIGRFVLAKFWSQRGKKTYKYVCRIIDLDPLVVEGFKSLGNKKEFKLVRDDISEIEANDILAYLPKPKPFESQDSDVECVQFFFDIDIAELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907814; iTF_00171689; iTF_01064574; iTF_00171690;
- 90% Identity
- -
- 80% Identity
- -