Lnyc006774.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- -
- Assembly
- GCA_963978505.1
- Location
- OZ021682.1:12109297-12114709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 0.79 10.2 0.1 1 20 17 36 17 38 0.93 2 15 0.00013 0.0096 16.2 0.2 1 21 66 86 66 87 0.95 3 15 1.1e-05 0.00082 19.6 0.1 1 22 95 116 95 116 0.96 4 15 1.9e-05 0.0014 18.9 0.2 2 21 140 159 139 160 0.94 5 15 3.6 2.6e+02 2.3 0.2 5 21 194 210 193 211 0.92 6 15 1.9e-05 0.0014 18.9 0.9 1 23 219 242 219 242 0.94 7 15 0.00019 0.014 15.8 2.0 1 22 288 309 288 309 0.96 8 15 0.00059 0.042 14.2 0.1 2 21 322 341 321 342 0.94 9 15 0.59 43 4.8 10.0 3 23 351 373 350 373 0.89 10 15 0.0012 0.087 13.2 1.6 1 21 396 416 396 417 0.96 11 15 0.34 25 5.5 0.0 3 17 427 441 425 442 0.92 12 15 0.0002 0.014 15.7 0.1 1 20 489 508 489 510 0.93 13 15 0.017 1.2 9.6 1.3 2 21 636 655 635 656 0.93 14 15 0.076 5.5 7.6 0.1 1 20 714 733 714 735 0.82 15 15 0.018 1.3 9.5 0.4 1 21 745 765 745 769 0.91
Sequence Information
- Coding Sequence
- ATGTGCGGCGTCGATGCTTCAGGACGTCGTCGCAtaggctcgaaaaaatatctctgcGTCGATTGCGGCAGCACTTTTGCTCTGAAAGCCTCATTGTCGCGACACCAGTATCTCGAGTGCACTAAGACACCGCCGCCCACTAAACGTCGCAGCGAGCCAGCACGCTCCTCCGAGTCGAAGAAAACTTCGAAGAAATACGATTGCCCCGTTTGCGGACGATCTTACGCTTTCTACACCTCGCTCTGGCGGCACCAGAATTACGAGTGCGGGATGGAACCAAAATTTCCGTGCGACGTCTGCCGCATCAAATTTGCCCAGAAAAGCAATCTCGATCGCCACATGCGTATAATGAACCTGAACCGTCGGCACCAACGACGATCGAGACCACTCAACGATTCGACAGGCGACACTTCACTCAGGTGTCCAAATTGCGGTAGATCGTACAAGATGAAGAGGAATCTGGCTCGTCACATCAACTTCGAGTGTGgCTATTGTCTCGAAGATGAAGCGTATAACAACGTTCGTCGCCGAAGATCGAGacacgacgatcgtcgaagagGCGCCTCCTTGCTGGAGTGCGTATGTGGCAGGACTTATCTCAAGCGAGCTGGACTCTACAAGCATCAACGTTACGAATGCGGAGGCCAGCAGCGTTACCTCTGCGACGTATGCGGAAGAGCTTTCTCCCAGAACTCAAGTCGTCGACGTCATCTGAAGCTAACCCACAATATCGTACGACCACCGATACCTCGAGGAGACGCCAGACGCGCGTTCGCACTCTATCCCGAGTGtacgatgaacgaaaatatgCAAAGATGGGATCCGATAACTTCGACCTGGACACCGGAAACAGACAAGCCATTCATGTGCACCAATTGCGGCAAGGGTTACACCCACATATTCACCCTGAATAGGCATCGTCGAACGGTGTGCGGGAAGATGAGGAGCTCCGGTGGAAGCTGGAAGTGCCCTCGATGTTCGAGATCCTACGTGAACGAGGGAAATCTCGCGAGACACGTTAAATTCGAATGCGGCGtcagaagaaaattttgctGCATATTCTGCAATCACAAGTTCACGCAGCGTTGCAGTTTGCTCAGACATCTGAAGACTTTCCATAATGAAAATCCGGAGGCTGCCGATCGTGAAGCCCGCTGCTACAATTCTGACAGGAAGCTCGGACCGTACGTTTGCCATAGATGCGGACACAGATACATGAACAAGTATTCGTTGGGAAGGCACGTGAGAATCGAGTGTGGAAAACCGCCGAGCTGGGCATGTCCTATGTGTCCTTATCTCACCACTCACAAGTCGAATCTCATCCATTGCGCATTAATGCCTgacgacagttttttttcctttcctgtTCCAGTTTTAGGATGGCCGACCGAGCAGGCGTTCTCGTACGATGTGAGGAACGATTACTACCAGGACAATCGCGGCTGTCGCAAACGCCCGAGATCGTTTGCCTGTTCCGTTTGCGGCAAGGCCTACACCGTTTGGAGGTCATTATGGAGGCACGAGAAGTTTGAGTGCGTCAATGCAAGACCGGCTCTCTCGTGCGATTTGTGCTCTTACAAAAGTCCTCACAACTGGTGCGTCCAGAATCACAAGAAGAGACATCACGAGTCCGAGGTGATTGAGGATGAATATCTATcgacgtcgatcgtcgatgaggaagaagaagaagtggaGGAAAAGGTTGAGTACGACGTTGCCGAGGACGACGAGTCAATGTTTATGGAATTTCCGAACGAAGACGAAGCTGAAGATATCGCACTCGGTTCGGAGCACTATTCGTCCCAAGTCGTCGAGACGACGGATTCGATTCTCAAGAGAGCCACCAGTTTGTTCGAGGTGTCGGAGGAGGGAGAATTGATACTGAAGAGTAATAACGAGGAATGTCAGTGCGAGAACTGCGGAAAGGTTTACAACTGGTTGACATCACTGAGTCGACACAGGCGAAATTGTCCGAACAGGCGAGACTCTGAAAAAGACCAGATAGAAAAGGAGGAAGTAGAATTGGGCGAGACGGAATCAATTGACGAGGACTCGAAGAAGAAACCGTGCGAAGAGTCGCTGGCGAGCCACAAGCCCCGATTCCGCGAGCTTCACAAGTACGAAACCAACGACGGTGTATACTCCTGTTGGGACTGCGGAAAATCGTACCTGTGGGCCTCCTCTTTGTCGCGACATCGGACCATCGAGTGCGGTCCGAAGAACAAGAAAAGATTCGTATGTGCTATGTGCAACTACAGAACCGGGTACAAGGGCAATTTCGTGAGGCATCTCAAGGCACCCCGACATCTGTTCAATAGcacaattgagaaaaaaagaagacaagaGACGAAAACTGCGAGAAGATGCGTCCGACAAGTTTTGTTGGAAACCATCGAAGCGCGGGAAGAAATATCGGACACTTTCGAAGATGAAGGCACtaacgagaacgaggaatCTTCGAAGGAAATCGATTTACAGTTATGA
- Protein Sequence
- MCGVDASGRRRIGSKKYLCVDCGSTFALKASLSRHQYLECTKTPPPTKRRSEPARSSESKKTSKKYDCPVCGRSYAFYTSLWRHQNYECGMEPKFPCDVCRIKFAQKSNLDRHMRIMNLNRRHQRRSRPLNDSTGDTSLRCPNCGRSYKMKRNLARHINFECGYCLEDEAYNNVRRRRSRHDDRRRGASLLECVCGRTYLKRAGLYKHQRYECGGQQRYLCDVCGRAFSQNSSRRRHLKLTHNIVRPPIPRGDARRAFALYPECTMNENMQRWDPITSTWTPETDKPFMCTNCGKGYTHIFTLNRHRRTVCGKMRSSGGSWKCPRCSRSYVNEGNLARHVKFECGVRRKFCCIFCNHKFTQRCSLLRHLKTFHNENPEAADREARCYNSDRKLGPYVCHRCGHRYMNKYSLGRHVRIECGKPPSWACPMCPYLTTHKSNLIHCALMPDDSFFSFPVPVLGWPTEQAFSYDVRNDYYQDNRGCRKRPRSFACSVCGKAYTVWRSLWRHEKFECVNARPALSCDLCSYKSPHNWCVQNHKKRHHESEVIEDEYLSTSIVDEEEEEVEEKVEYDVAEDDESMFMEFPNEDEAEDIALGSEHYSSQVVETTDSILKRATSLFEVSEEGELILKSNNEECQCENCGKVYNWLTSLSRHRRNCPNRRDSEKDQIEKEEVELGETESIDEDSKKKPCEESLASHKPRFRELHKYETNDGVYSCWDCGKSYLWASSLSRHRTIECGPKNKKRFVCAMCNYRTGYKGNFVRHLKAPRHLFNSTIEKKRRQETKTARRCVRQVLLETIEAREEISDTFEDEGTNENEESSKEIDLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058924; iTF_00058151;
- 90% Identity
- -
- 80% Identity
- -