Afus010856.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- topi
- Assembly
- GCA_963575735.1
- Location
- OY754491.1:18637852-18643595[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.013 1.2 10.1 0.1 1 20 55 74 55 76 0.93 2 17 0.0011 0.097 13.6 0.6 1 21 104 124 104 125 0.93 3 17 1.4e-05 0.0013 19.5 0.1 1 22 133 154 133 154 0.96 4 17 1.8e-05 0.0017 19.1 0.4 2 21 178 197 177 198 0.95 5 17 0.0017 0.16 12.9 1.7 1 23 206 229 206 229 0.95 6 17 4.4 4e+02 2.2 0.2 5 21 283 299 282 300 0.92 7 17 2.4e-05 0.0022 18.7 0.9 1 23 308 331 308 331 0.94 8 17 0.00023 0.021 15.6 2.0 1 22 377 398 377 398 0.96 9 17 0.00072 0.066 14.1 0.1 2 21 411 430 410 431 0.94 10 17 0.73 66 4.6 10.0 3 23 440 462 439 462 0.89 11 17 0.0015 0.14 13.1 1.6 1 21 481 501 481 502 0.96 12 17 0.042 3.8 8.5 2.0 3 21 512 530 510 533 0.87 13 17 0.00024 0.022 15.6 0.1 1 20 565 584 565 586 0.93 14 17 5.3 4.8e+02 1.9 6.2 2 23 596 617 595 618 0.94 15 17 0.021 1.9 9.5 1.3 2 21 718 737 717 738 0.93 16 17 0.093 8.5 7.4 0.1 1 20 796 815 796 817 0.82 17 17 0.023 2.1 9.4 0.4 1 21 827 847 827 851 0.91
Sequence Information
- Coding Sequence
- ATGTCGCGAGGCGACCGTACGTACAGCTCATCGAATTGGACAGTTCCGACTCTGCCATCGGCCAGAGACAATTTTGGAAGACGTCTTCGATCCACCACTCACGGACCCGACGTTATGTGCGGCGTCGATGCTTCGGGACGTCGTCGTATAGGCTCGAAAAAATATCTCTGCGTCGATTGCGGCAGCACTTTTGCTCTGAAAGCCTCGCTGTCGCGTCACCAGTATCTCGAGTGCACTAAGACACCGCCGCCTACTAAACGTCGCAGCGAGCCCGCACGCTCCTCCGAGTCGAAGAAAACTTCGAAGAAACACGATTGCTCTGTTTGTGGACGCTCTTACGCTTTCTACACTTCGCTCTGGCGGCATCAGAATTACGAGTGCGGAATGGAACCAAAGTTTCCGTGTGACGTCTGCCGCATCAAGTTTGCCCAGAAGAGCAATCTCGATCGCCACATGCGCATAATGAACCTGAATCGTCGGCACCAACGGCGATCGAGACCACTCAACGATTCGACCAGCGACTCTTCACTCAAGTGTCCAAATTGCGGTAGATCGTACAAGATGAAGAGGAATCTGGCTCGTCACATCAACTTCGAATGCGGTGGACAACGAAACTATGCGTGTCACGTGTGCCCGTCCAAGTACACGCAAAACATTACACTACGTCGGCACTTGTTGCAACGACACAATATCTATGTGCCACCTTTGAACTCCGTTCCCAAAAGAATATTCCTGCCTAACGAAAAAGGAACGGGCTATTGTCTTGAAGATGACGCATACAGCAACGTTCGTCGCCGAAGATCGAGACACGACGATCGTCGAAGAGGCGCCTCCTTGCTGGAGTGCGTGTGCGGCAGGACTTATCTCAAGCGAGCTGGTCTCTATAAGCATCAACGTTACGAATGCGGCGGCCAGCAGCGTTACCTCTGCGACGTGTGCGGAAGAGCTTTCTCCCAGAACTCAAGTCGTCGACGTCATCTGAAGCTAACTCACAATATCATACGCCCACCGATTCCTCGAGGAGACGCCAGACGCGCGTTCGCTCTCTATCCCGAGTGTACGATGAACGAAAATATGCAAAGATGGGATCCGATAACTTCGACCTGGACACCGGAAACCGACAAGCCATTCATGTGCACCAATTGCGGCAAGGGTTACACCCACATATTCACCCTAAATCGGCATCGTCGAACGGTGTGCGGGAAGATGAGAAGCTCCGGTGGAAGCTGGAAGTGCCCCCGTTGCTCGAGATCCTACGTGAACGAGGGCAATCTCGCGAGACACGTTAAATTCGAGTGCGGCGTCAGAAGAAAATTTTGCTGCATATTCTGCAATCACAAGTTCACGCAGCGTTGCAGTTTGCTCAGACATCTGAAGACTTTTCACAATGAAAATCCGGAGGAAGCCCGCTGCCTCAATTCTGAAAGGAAGCTCGGACCGTACGTTTGCCATAGATGCGGACACAGATACATGAACAAGTATTCATTGGGAAGGCACGTGAGAATCGAGTGTGGAAAACCGCCGAGCTGGGCATGTCCTTTGTGTCCTTATCTCACCACTCACAAGTCGAATCTCGTGAGGCAttgcaaaaatgttcattTTTTAGGATGGCCGACCGACCAGGCGTTCTCGTACGATGTGAGAAACGATTACTACCAGGACAATCGCGGCTGTCCCAGACGTCCGAGATCGTTCGCCTGTTCCGTGTGCGGCAAGGCCTACACCGTTTGGAGATCATTGTGGAGACACGAGAAGTTCGAGTGCGTCAATGCGAGACCGGCTCTCTCCTGTGATCTCTGCCCTTACAAGAGTCCTCACAAGTGGTGCGTCCAGAATCACAAGAAGAAACATCACAGCGACGTTCAGACCGGCCATTACAAGTCCGAGATAAACGAGGATGAATATCTGTCGACGTTGATCGTCGatgaacaagaagaagaagtggaggaaaaggagcaATACAACGTCGCCGAGGACGACGATTCAATGTTTATGGAATATCCCAACGAAGACAACAATGAAGAGATCGCACTCGGTTCGGAGCGTTATTCGTCCAAAGAGTTTATTCGTAATTCGTCCAAGAGAGCCGCGGATTTGTTCGAGGTATCGGAGGAGGGAGAATTGATATTAAAGAGTAACAACGAGGAGTGCCAGTGCGAGAACTGCGGAAAGGTTTACAACTGGTTGACGTCGCTGAGTCGGCACAGGAGAAATTGTCCGAACAGGCGAGACTTCGAGAAAGACGAGATGGAAAAGGAAGAAGCGGAATTGGACGAGACGGAAGAAATCGACGAGGACTCGAAGAAGAAATCGTGCGAGGACTCGCTGGCGAGCCACAAGCCCCGATTCCGCGAGCTTCACAAGTACGAGATCAACGACGGTGTTTACTCCTGCTGGGATTGCGGAAAATCGTATCTGTGGGCCTCTTCGTTATCGCGACATCGGACCATCGAGTGCGGTCCGAAGAACAAGAAGAGATTCGTGTGCGCTATGTGCAACTACCGAACCGGGTACAAGGGCAATTTCGTCAGGCATCTCAAGGCACCGCGACACCTGTTCAACAGCACCATCGAGAAGCAAAGAAGACAAGAGGCGAACACTGCGAGAAGATGTGTCCGAGAAATGTTGCTGGAAGCCGTCGAATCGCCGGCAGAAATATCGGACACCTTCGAGGCTGAAGACACTAACGAGAACGAGGAATCTCGGAAGGAAAACGATTTACAGTTATGA
- Protein Sequence
- MSRGDRTYSSSNWTVPTLPSARDNFGRRLRSTTHGPDVMCGVDASGRRRIGSKKYLCVDCGSTFALKASLSRHQYLECTKTPPPTKRRSEPARSSESKKTSKKHDCSVCGRSYAFYTSLWRHQNYECGMEPKFPCDVCRIKFAQKSNLDRHMRIMNLNRRHQRRSRPLNDSTSDSSLKCPNCGRSYKMKRNLARHINFECGGQRNYACHVCPSKYTQNITLRRHLLQRHNIYVPPLNSVPKRIFLPNEKGTGYCLEDDAYSNVRRRRSRHDDRRRGASLLECVCGRTYLKRAGLYKHQRYECGGQQRYLCDVCGRAFSQNSSRRRHLKLTHNIIRPPIPRGDARRAFALYPECTMNENMQRWDPITSTWTPETDKPFMCTNCGKGYTHIFTLNRHRRTVCGKMRSSGGSWKCPRCSRSYVNEGNLARHVKFECGVRRKFCCIFCNHKFTQRCSLLRHLKTFHNENPEEARCLNSERKLGPYVCHRCGHRYMNKYSLGRHVRIECGKPPSWACPLCPYLTTHKSNLVRHCKNVHFLGWPTDQAFSYDVRNDYYQDNRGCPRRPRSFACSVCGKAYTVWRSLWRHEKFECVNARPALSCDLCPYKSPHKWCVQNHKKKHHSDVQTGHYKSEINEDEYLSTLIVDEQEEEVEEKEQYNVAEDDDSMFMEYPNEDNNEEIALGSERYSSKEFIRNSSKRAADLFEVSEEGELILKSNNEECQCENCGKVYNWLTSLSRHRRNCPNRRDFEKDEMEKEEAELDETEEIDEDSKKKSCEDSLASHKPRFRELHKYEINDGVYSCWDCGKSYLWASSLSRHRTIECGPKNKKRFVCAMCNYRTGYKGNFVRHLKAPRHLFNSTIEKQRRQEANTARRCVREMLLEAVESPAEISDTFEAEDTNENEESRKENDLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905611;
- 90% Identity
- -
- 80% Identity
- -