Lnyc005932.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- -
- Assembly
- GCA_963978505.1
- Location
- OZ021682.1:1648290-1651588[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1 3.6e+02 1.8 0.0 3 16 222 235 221 237 0.91 2 15 0.0054 0.39 11.2 5.1 1 23 406 429 406 429 0.98 3 15 0.047 3.4 8.2 0.2 1 21 435 455 435 456 0.94 4 15 3.4e-06 0.00025 21.3 3.0 1 23 517 540 517 540 0.98 5 15 0.0011 0.077 13.4 0.1 1 23 553 576 553 576 0.98 6 15 1.9e-05 0.0013 18.9 2.6 1 23 597 620 597 620 0.95 7 15 0.15 11 6.6 1.0 1 20 626 645 626 650 0.91 8 15 0.055 4 8.0 5.5 1 23 663 685 663 685 0.93 9 15 1.1 82 3.9 0.1 3 23 693 714 691 714 0.87 10 15 2e-05 0.0014 18.9 2.7 1 23 728 750 728 750 0.99 11 15 3.7e-07 2.6e-05 24.3 1.6 1 23 756 778 756 778 0.98 12 15 0.0017 0.13 12.7 0.9 1 23 784 806 784 806 0.98 13 15 0.0037 0.27 11.7 4.1 1 23 812 834 812 834 0.99 14 15 4.3e-06 0.00031 20.9 0.7 1 23 840 862 840 862 0.99 15 15 3.9e-05 0.0028 17.9 2.0 3 23 870 891 868 891 0.95
Sequence Information
- Coding Sequence
- ATGCTGACGCTCATTCTGCAAACCTTGGAAGGACAGCAAATAGAGTTAAACGTCCAGCCGGAGGATACATTCGCTGATTTGAAGATACAATACTCCGACGCAGATGGCTTGTCCGAGTCGCTGGAACGACTAATCACCAATGGTGCCGCAGTAGAAGAAAGTACCAGAATATTCGACTATGTAACTAGTAGCGCACACGAATGGTTCAGCACGGGTGAGATGCAGGAGTCGGACGCGCAGTCCTCGGAAGCCGCGGATCCTCGGACCAGGGTGAAAGAATGTTGCGCACAGGGCTGCTCTAATTCCGAAGCTGTCACGCCTGgtaaaccattttttcctttgcctACAGATGACGAAAGgCTGACTGAATGCCTGACTGAAGCAGGCAGACCGGATTTGTGCAGCCATGCTCTCGGCTTGGATCCCGCTAGTTACcagaagtattttttatgcGGAAATAATTTCGCCGAAGATTCTTTACCGCCGGCGCGCGCTGTCGAGCCGATGCCGACAATGTCGGTGCTGAAACCGAAAAATGTGAGAATTCGGTCCGACATCGCCAGCGAACCGGAAAACGACCTTCTAGAAGTCGATTCCGAAACAAGAGATTCTCTTGTGGATCCAACGAGAACACCGGACAATTTCGAGCACCCTGGAGTTCTTTGCCGTTTGTGCGGCGAAACTACTGAGAATCCTGTTCATCTGTATGCGGAGAAGGGAGAAAACTCGGAATACAGTCTCGCTGACAAAATCAACTTGTGCCTTCCCGTTACGgTGAGCGTAACGGATTCACTGCCGAAGCAGATATGCCGAGAGTGCCAAATTAAACTGAATACATGCCATGAACTCGCGCTATCCTCCCTTAGAACGGAGGACAAGCTTATTCTTCTTTTGCGAGAGAACAAGCTTTGCGCGAACGGTGCTTTCGAGCATCAGTGTCCTCTCTGTCTCGAGGGCGCCATGCGGATGGTGAAAAGAAGCGGTATCTACCGTAAGGAGGATCTGCAGAACGATCTCACTTTTTCGAAAGAGCGAAAACCTACCAGAGGCTCAATCGAGATCGAGGTGGATTCAAAAAATGAGGACAACGTTATCTCTGAAAGCGTTTCGCTTCCGGTGCCGGAAGAATTCCCGAGTTCGGTGTGCGACGAGAGGCTGATCGGCGTGACGGCGATCCGCTCTCACCGATGTCCAACCGATGCGAAACATTCTCCTTATAATTGCCATATCTGtgatgaaaaagatttcgcgCATTCCCACGAGCTCGAGCTTCACTATCGTCGGCACGGCATGAAGGAGAAATTTTTCTGTGAGCTGTGCGGTTACACGTGCGGGCAACTGGACGAGGTAAACGAGCACATTAAAGCCTGCAGACCCGAGTTCTGGCAATTCCACCGTGAAGCTTTCGGCAAGGCGCTTCCGAACGGCGAGTCGCCGAACGATCACGATTGCCATGGCGCTTCACCGGATCCTCGCGATTCCgaggtgaaattttcatgcgaGCCAGAAGCGCTGAAGTCATCGGCGAAAAAGAGGCAGCCGACACGATACAGTTGCCACTTCTGCGAGAAGCGATTCGCGCGAAAGGGAAGCCTGCAGAAGCACTTATCGACGGCGCACAACGACACGATGGACGATCCAGCGGCCTCGAAGTGCTACAAGTGCAGAGGCTGTAACGAGGCCTTCGCGAAGGAAGGGGACGTCGCGACGCACATAAAGATTCGTCATCTCGACGACTCGCAGTCCGAACTCGAGTACGCCATCGACGAGTTATCGGTCGCCAGTTTGTACATCTGCGAGTACTGCGAGCGGTGCTTCACCACCCCGAGCTCCCTTCACGATCATCGAGAGGTCGAGCATGACAAAATTTCATGTTACTCCTGCCCAACGTGCCTCGAGATGTTCGACTCTCACAAGCGGCTCGCCGCCCACAAGAGTCTGCGATCTCATCGCAAACCTCTTGACTACCTCAATTTGAAGCAGCTTTATCTGTGCAGGTACTGCGACAAGACTTTTCTTCATCATTCTACTCTGACGACGCACGAGCTTCAGCATCGCGACCTCGCGCCCTATCTCTGCAGACCGTGCGGTCTCAGTTTCGAGACTTACAGGGAGGTCGCCTCACATCGGGACGTCGTTCATCCTTATCAGTCAGAGCTGCACGAGAGTTCCAGCCGATCATACAAGTGCCAATACTGCGGCAAGCTCTTCTCTCACGAGTTTGTTCTCGTTAAACACATCAGAATGCACACCGGCGAACGACCTCACAAATGTTCCGTCTGCGGCAAGGGATTCTCGCAGAGCTCCGGTCTGTACACTCACATGAAGATCCACTCGGACCTGCGGCCCTACAATTGTCCGAGCTGTCCTCGCACCTTCAAGATCAAGGGCGATCGCAACAATCACGTGAAGAAACACTCGGGAAATCGGCCGTACAAGTGTGAATTTTGCTCGAAGGCATTCATGACTCAGCACGTTTACAGTCAACATCGGAGGATTCATACCAACGAGAGACCGTACAAGTGCGAAATTTGCGGCGAGGCCTTTCGAAGATCATACGTAAGAACGGTCCACATGAGAAGGCACACGGGCGAAAAGCCACATCTGTGCGATCTGTGCCCGAAGACTTATCGCCAACGCAGCGATCTTGTCAAGCATCGTAAAGTACAGCACGGCATAAGCGTCGTCGCAAACTCGGAGATCGTTTTTCCCAATGAACGCGAAGACGATTCCAACGACTCATATGCAAAGGCAAACGAGATAGTCGAAACTGCGGCCGGTAATTCGTTGCTGTTGGGCAtctga
- Protein Sequence
- MLTLILQTLEGQQIELNVQPEDTFADLKIQYSDADGLSESLERLITNGAAVEESTRIFDYVTSSAHEWFSTGEMQESDAQSSEAADPRTRVKECCAQGCSNSEAVTPGKPFFPLPTDDERLTECLTEAGRPDLCSHALGLDPASYQKYFLCGNNFAEDSLPPARAVEPMPTMSVLKPKNVRIRSDIASEPENDLLEVDSETRDSLVDPTRTPDNFEHPGVLCRLCGETTENPVHLYAEKGENSEYSLADKINLCLPVTVSVTDSLPKQICRECQIKLNTCHELALSSLRTEDKLILLLRENKLCANGAFEHQCPLCLEGAMRMVKRSGIYRKEDLQNDLTFSKERKPTRGSIEIEVDSKNEDNVISESVSLPVPEEFPSSVCDERLIGVTAIRSHRCPTDAKHSPYNCHICDEKDFAHSHELELHYRRHGMKEKFFCELCGYTCGQLDEVNEHIKACRPEFWQFHREAFGKALPNGESPNDHDCHGASPDPRDSEVKFSCEPEALKSSAKKRQPTRYSCHFCEKRFARKGSLQKHLSTAHNDTMDDPAASKCYKCRGCNEAFAKEGDVATHIKIRHLDDSQSELEYAIDELSVASLYICEYCERCFTTPSSLHDHREVEHDKISCYSCPTCLEMFDSHKRLAAHKSLRSHRKPLDYLNLKQLYLCRYCDKTFLHHSTLTTHELQHRDLAPYLCRPCGLSFETYREVASHRDVVHPYQSELHESSSRSYKCQYCGKLFSHEFVLVKHIRMHTGERPHKCSVCGKGFSQSSGLYTHMKIHSDLRPYNCPSCPRTFKIKGDRNNHVKKHSGNRPYKCEFCSKAFMTQHVYSQHRRIHTNERPYKCEICGEAFRRSYVRTVHMRRHTGEKPHLCDLCPKTYRQRSDLVKHRKVQHGISVVANSEIVFPNEREDDSNDSYAKANEIVETAAGNSLLLGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721477;
- 90% Identity
- -
- 80% Identity
- -