Lnyc007914.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963978505.1
- Location
- OZ021683.1:4964509-4968581[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-116 1.1e-111 372.8 31.4 1 300 29 327 29 327 0.97 2 3 0.0042 71 2.4 2.7 122 171 327 376 325 379 0.91 3 3 0.033 5.6e+02 -0.5 5.3 193 238 357 401 339 402 0.60
Sequence Information
- Coding Sequence
- ATGGAGTCGACTATAGCAGGACGAAGACGCAATGCCACTAGGCATTCTGCCGAGGATCAGGCACTTGACCAGATAGCCAAAGAGGCAGAAGCAAGATTGGCCGCACGAAGACAGGCTCGTGCTGAGGCTCGAGAAATTCGGATGAGAGAACTGGAAAGGCAACAAAAAGAGGCGGAAGAGAATGCGGATAGAGTCTACGACATGTGCTCCGCCGAAGGAAACAGAACCATGAGAGTAACTCCAGATCCAGTAAGGACATCGCGTCTACTTGCGAACTCCAACAATTTTCAGTCAAGTCGAAGATCTTCCGAGGATTCCCTGGAAGATGCGGGTCTGAGCAGAGATCTCAGATTGGAGCTCAAAGAGTTCGAGGAGAAATTTAGGAAAGCAATGATAGCGAACGCTCAGCTGGACAACGAGAAGTCATCGTACGGATATCAGGTGGATTTGTTGAAAGACAAATTGGAGGAACTGGACGAGACCACCGCACAACTGCGGCGCGAActcagggaaaaaaatagagaggCGGAACAATTGAAACGTATAAGTCAACGATTAAAAGAAGACTTTAATGTATGCAGAGAGCAATTGTTGGAGAGGGACACGCTTATCCAGGAAAACGGGCTGGTCATAGTGGACGATGAAGGCAGCGGAGATGAAGATGCTGAGACGACTAATGGATCTTGTTACAGAAAAAGGGTACTAGTCAGCACAGAAGCTGCAGAGCTATTACAAAACGCTGGTGAAGGCTCCCTAGACGTACGATTGAGAAAATTTGCTTCGGAAAAGAAGGAACTGCAAGACGAGATTGGACACCTGAGGTTGGAATTGGAAGAAGCGAAGAGTCGCCTGAGATCAGAAAAAACACCCGGTTCAGTATTAGGTGGCCTGTCGGATTCGGAGGACGTGCAGAGGGAGGCAAACAAATTATTGGCAGattataaattcaaattaCAAAAAGCTGAACAGGACATGTCAACGTTACAAGCGACCGTCGCGAGATTGGAGAGCCAAGTTATTCGTTACAAGTCCGCGGCCGAAGCATCGGAAAAGGCAGAGGACGAACTCAAAGTTGAGAAAAGGAAACTGCAAAGAGAAgtaCGCGAATCACAAGGCCGCGTCGAAGAACTGGAAACGGCAAATTCGCACTTACAGAGACGACTGGACAAACTTAAAAATGCTAAATCTGCACTGTTGAAAGAACTCTGA
- Protein Sequence
- MESTIAGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSAEGNRTMRVTPDPVRTSRLLANSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYGYQVDLLKDKLEELDETTAQLRRELREKNREAEQLKRISQRLKEDFNVCREQLLERDTLIQENGLVIVDDEGSGDEDAETTNGSCYRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEAKSRLRSEKTPGSVLGGLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01102050;
- 80% Identity
- -