Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010003020.1:1410-6029[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5e-06 0.00044 21.2 0.4 1 23 97 119 97 119 0.97

2 14 0.00051 0.064 14.3 0.9 1 23 125 147 125 147 0.95

3 14 7.4e-06 0.00092 20.1 3.1 1 23 153 175 153 175 0.97

4 14 1.7e-05 0.0021 19.0 4.7 1 23 181 203 181 203 0.99

5 14 3.1e-05 0.0038 18.2 5.7 1 23 209 231 209 231 0.97

6 14 1.5e-07 1.9e-05 25.5 4.3 1 23 237 259 237 259 0.98

7 14 5.4e-08 6.7e-06 26.9 2.4 1 23 265 287 265 287 0.97

8 14 3.1e-05 0.0039 18.2 6.7 1 23 294 316 294 316 0.97

9 14 5.4e-05 0.0068 17.4 6.5 1 23 322 344 322 344 0.98

10 14 3.2e-07 4e-05 24.4 7.7 1 23 350 372 350 372 0.98

11 14 0.0001 0.013 16.6 9.5 1 23 378 401 378 401 0.95

12 14 3.6e-05 0.0045 18.0 0.9 1 23 407 429 407 429 0.98

13 14 0.0002 0.025 15.6 3.6 1 23 439 461 439 461 0.98

14 14 4.4e-06 0.00055 20.8 1.6 1 23 467 490 467 490 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5e-06	0.00044	21.2	0.4	1	23	97	119	97	119	0.97
2	14	0.00051	0.064	14.3	0.9	1	23	125	147	125	147	0.95
3	14	7.4e-06	0.00092	20.1	3.1	1	23	153	175	153	175	0.97
4	14	1.7e-05	0.0021	19.0	4.7	1	23	181	203	181	203	0.99
5	14	3.1e-05	0.0038	18.2	5.7	1	23	209	231	209	231	0.97
6	14	1.5e-07	1.9e-05	25.5	4.3	1	23	237	259	237	259	0.98
7	14	5.4e-08	6.7e-06	26.9	2.4	1	23	265	287	265	287	0.97
8	14	3.1e-05	0.0039	18.2	6.7	1	23	294	316	294	316	0.97
9	14	5.4e-05	0.0068	17.4	6.5	1	23	322	344	322	344	0.98
10	14	3.2e-07	4e-05	24.4	7.7	1	23	350	372	350	372	0.98
11	14	0.0001	0.013	16.6	9.5	1	23	378	401	378	401	0.95
12	14	3.6e-05	0.0045	18.0	0.9	1	23	407	429	407	429	0.98
13	14	0.0002	0.025	15.6	3.6	1	23	439	461	439	461	0.98
14	14	4.4e-06	0.00055	20.8	1.6	1	23	467	490	467	490	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCCGCGAGCTCAGCTCCTTCGGTAGTTACCCCCGTTGTAACGACCGGTGGTGGTACGACCATTACACTTGGCGGCCCGCCACCCTCAGCAGCTAAATCGGAAGGCAAGGAGGACGGCAAGCCTCCGCACGGCATTGAAATcggcagcggctgcagcagcggcatcaTCAGCGCCGCCCGTCACAACAAGTGGCGGAAGCGGACAACAAACGACCGCAACAATAACCACAACCGGCGGTACTGCGGGCACTACGACAACGGCGAGCGCAAACCGTTTATGTGTCAAGTGTGCGGCCAAGGCTTTACCACGTCGCAGGATCTAACGCGTCATGGCAAGATACACATCGGCGGGCCCATGTTCACCTGTATTGTGTGCTTTAATGTGTTCGCGAACAACACCAGTCTGGAGCGGCACATGAAACGGCACTCAACGGACAAACCTTTTGCTTGCACCATTTGTCAGAAGACATTCGCGCGCAAAGAGCACTTGGACAACCATTTTCGATCGCACACTGGCGAAACGCCGTTCCGTTGTCAATACTGCGCCAAGACGTTTACGCGCAAGGAGCATATGGTTAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACACGAAAGGAGCATCTAGCCAATCACATGCGTTCTCACACCAACGAGACGCCGTTCCGTTGTGAAATCTGTGGCAAGAGTTTTAGCCGCAAGGAGCACTTCACTAATCACATCCTCTGGCATACAGCAGGCGAGACGCCTCACCGCTGCGACTTCTGTTCAAAGACGTTCACGCGAAAGGAACACTTACTGAATCACGTGCGTCAGCATACTGGAGAGTCACCTCACCGCTGTTCGTACTGCATGAAGACGTTTACACGCAAGGAGCACCTGGTCAACCACATCCGGCAGCACACGGGAGATTCGCCGCACAAGTGCGAATACTGCCAGAAGACGTTCACCCGCAAGGAGCACCTCAACAATCATATGCGGCAACACTCCAGCGACAATCCCCACTGCTGTAATGTGTGCAACAAACCTTTTACAAGAAAGGAGCATCTTATTAATCACATGTCGCGCTGTCACACAGGCGATCGACCCTTTACATGCGAGACGTGCGGTAAATCCTTCCCATTAAAAGGCAACCTACTATTCCACCAGAGGAGCCATACCAAGGGGCAGGAGTGCGAGAGGCCGTTCGTTTGCGAGAAGTGCCCGAAGAACTTTATTTGCAAAGGTCACTTGGTCTCGCATATGCGCTCCCATTCGGGCGAGAAACCACACGCCTGCACTCTGTGCAGTAAAGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCTGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACGCAAGTCAAGCAAGAAGTGAAACCGATCATAATTCCCCATCAATCGACTACCATGCACACCATCCAGCAAATCACTGCGGGTGCGGCTGCAGGAGCTAATGCCGTACAGCTTACTCCAGGGCTGTTGCAACATTTGCCGGCAAATGTCGAACAGCATCCAGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVTPVVTTGGGTTITLGGPPPSAAKSEGKEDGKPPHGIEIGSGCSSGIISAARHNKWRKRTTNDRNNNHNRRYCGHYDNGERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFVCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHQSTTMHTIQQITAGAAAGANAVQLTPGLLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00904865;
90% Identity: iTF_00904865;
80% Identity: iTF_00904865;