Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010003020.1:1410-6029[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.9 1.1e+04 -2.8 0.0 19 29 99 109 94 115 0.70

2 15 0.026 73 4.1 0.5 16 41 124 146 117 148 0.86

3 15 0.026 72 4.1 3.7 6 38 143 175 142 175 0.72

4 15 0.00011 0.3 11.7 2.5 5 38 170 203 168 204 0.82

5 15 0.01 29 5.4 2.8 5 30 198 223 196 233 0.84

6 15 0.0025 6.8 7.4 3.3 18 38 238 259 226 262 0.86

7 15 0.0013 3.5 8.3 3.3 6 32 255 281 254 288 0.76

8 15 0.0054 15 6.3 2.2 12 34 289 312 278 322 0.69

9 15 0.00093 2.6 8.8 5.6 5 38 311 344 308 345 0.79

10 15 0.0019 5.4 7.7 3.8 18 38 351 372 343 376 0.84

11 15 0.048 1.3e+02 3.3 9.6 14 43 375 401 367 402 0.81

12 15 1.7 4.7e+03 -1.7 0.1 18 26 408 416 407 421 0.84

13 15 0.36 1e+03 0.5 3.1 13 38 435 461 423 462 0.84

14 15 0.0008 2.2 9.0 0.6 19 44 469 491 463 491 0.91

15 15 0.9 2.5e+03 -0.8 0.0 31 44 549 565 536 565 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.9	1.1e+04	-2.8	0.0	19	29	99	109	94	115	0.70
2	15	0.026	73	4.1	0.5	16	41	124	146	117	148	0.86
3	15	0.026	72	4.1	3.7	6	38	143	175	142	175	0.72
4	15	0.00011	0.3	11.7	2.5	5	38	170	203	168	204	0.82
5	15	0.01	29	5.4	2.8	5	30	198	223	196	233	0.84
6	15	0.0025	6.8	7.4	3.3	18	38	238	259	226	262	0.86
7	15	0.0013	3.5	8.3	3.3	6	32	255	281	254	288	0.76
8	15	0.0054	15	6.3	2.2	12	34	289	312	278	322	0.69
9	15	0.00093	2.6	8.8	5.6	5	38	311	344	308	345	0.79
10	15	0.0019	5.4	7.7	3.8	18	38	351	372	343	376	0.84
11	15	0.048	1.3e+02	3.3	9.6	14	43	375	401	367	402	0.81
12	15	1.7	4.7e+03	-1.7	0.1	18	26	408	416	407	421	0.84
13	15	0.36	1e+03	0.5	3.1	13	38	435	461	423	462	0.84
14	15	0.0008	2.2	9.0	0.6	19	44	469	491	463	491	0.91
15	15	0.9	2.5e+03	-0.8	0.0	31	44	549	565	536	565	0.83

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCCGCGAGCTCAGCTCCTTCGGTAGTTACCCCCGTTGTAACGACCGGTGGTGGTACGACCATTACACTTGGCGGCCCGCCACCCTCAGCAGCTAAATCGGAAGGCAAGGAGGACGGCAAGCCTCCGCACGGCATTGAAATcggcagcggctgcagcagcggcatcaTCAGCGCCGCCCGTCACAACAAGTGGCGGAAGCGGACAACAAACGACCGCAACAATAACCACAACCGGCGGTACTGCGGGCACTACGACAACGGCGAGCGCAAACCGTTTATGTGTCAAGTGTGCGGCCAAGGCTTTACCACGTCGCAGGATCTAACGCGTCATGGCAAGATACACATCGGCGGGCCCATGTTCACCTGTATTGTGTGCTTTAATGTGTTCGCGAACAACACCAGTCTGGAGCGGCACATGAAACGGCACTCAACGGACAAACCTTTTGCTTGCACCATTTGTCAGAAGACATTCGCGCGCAAAGAGCACTTGGACAACCATTTTCGATCGCACACTGGCGAAACGCCGTTCCGTTGTCAATACTGCGCCAAGACGTTTACGCGCAAGGAGCATATGGTTAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACACGAAAGGAGCATCTAGCCAATCACATGCGTTCTCACACCAACGAGACGCCGTTCCGTTGTGAAATCTGTGGCAAGAGTTTTAGCCGCAAGGAGCACTTCACTAATCACATCCTCTGGCATACAGCAGGCGAGACGCCTCACCGCTGCGACTTCTGTTCAAAGACGTTCACGCGAAAGGAACACTTACTGAATCACGTGCGTCAGCATACTGGAGAGTCACCTCACCGCTGTTCGTACTGCATGAAGACGTTTACACGCAAGGAGCACCTGGTCAACCACATCCGGCAGCACACGGGAGATTCGCCGCACAAGTGCGAATACTGCCAGAAGACGTTCACCCGCAAGGAGCACCTCAACAATCATATGCGGCAACACTCCAGCGACAATCCCCACTGCTGTAATGTGTGCAACAAACCTTTTACAAGAAAGGAGCATCTTATTAATCACATGTCGCGCTGTCACACAGGCGATCGACCCTTTACATGCGAGACGTGCGGTAAATCCTTCCCATTAAAAGGCAACCTACTATTCCACCAGAGGAGCCATACCAAGGGGCAGGAGTGCGAGAGGCCGTTCGTTTGCGAGAAGTGCCCGAAGAACTTTATTTGCAAAGGTCACTTGGTCTCGCATATGCGCTCCCATTCGGGCGAGAAACCACACGCCTGCACTCTGTGCAGTAAAGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCTGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACGCAAGTCAAGCAAGAAGTGAAACCGATCATAATTCCCCATCAATCGACTACCATGCACACCATCCAGCAAATCACTGCGGGTGCGGCTGCAGGAGCTAATGCCGTACAGCTTACTCCAGGGCTGTTGCAACATTTGCCGGCAAATGTCGAACAGCATCCAGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVTPVVTTGGGTTITLGGPPPSAAKSEGKEDGKPPHGIEIGSGCSSGIISAARHNKWRKRTTNDRNNNHNRRYCGHYDNGERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFVCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHQSTTMHTIQQITAGAAAGANAVQLTPGLLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00904866;
90% Identity: iTF_00904866;
80% Identity: iTF_00904866;