Lsab005407.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- SMARCC2
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000792.1:10068-14243[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 3.1e+03 -1.0 0.1 34 43 203 212 202 214 0.85 2 2 1.1e-14 1.5e-11 44.8 0.2 3 44 651 692 649 694 0.95
Sequence Information
- Coding Sequence
- ATGAACGCACATGGCCCCAAAAAGGATGGAAATCCCAACATCGATTTCTTCCAATCGGCAGAAACTCTGCAGGGCTTCGAATCCATCAGACAGTGGCTCCAAAAGAACTGTAAAAAGTATTTGGCCAACAGCTCGGATCCAATAACAAAGGAATCGCTGGCCCAGTTGCTGATACAGTTCTTGCAATATGTCGAAAACAAGCTGGGCAAAAACTCTGCCGAACCGCCGGCAACAAGAATTCCGATGCGCTGTTTTCTGGACTTCAAAAATGGTGGTGGACTTTGCATCATCTTCTCCACCATGTTCCGGTTTAGAGCAGAGCAGCGAGGCAAGAAATTCGATTTTTCCATCGGCAAGAATCCAAGCCGCAAGGACCCCAACATCCAGCTGCTCATTGAAATCGAGCAGGCTCTGGTTGAGGCCGACCTCTACAGGATACCCTACATCTACATCAGGCCGGAGATCGAGAAGGGCTTCGAATCGCGGCTGCGGGAAATTCTGGACAATCGAAGAGTGGAAATCGTCACCGACGAGGAAGACGCCACGCACATCGTCTATCCGGTGGTGGATCCCCATCCCGATGAGTACGCGCGGCCGATTTTCAAGCGCGGCAATCACGTAATGCTGCATTGGTATTATTTCCCCGAGTCCTACGACTCCTGGGCGGTCAACAACTTCGACCTGCCCGAGAACATCCCAGACAATCCTGAGTCCCCAGCCGAGCGTTGGCGGGTGTCGGCCTCTTGGATCCTCGACCTCGAGCAGTACAATGAATGGATGGCCGAGGAGGACTACGAAGTCGACGAGCagggcaaaaagaaaatgcacaAGCAGCGGATGTCCATCGACGATTTCATGGCCTTCGGTGACgagaaaaagaagccaacgcCCACCACGGGCAAGCAAAAGCGCCGGCGGTCGCCCTCCCCCAACACCTCCTCCTCCAAGCCGGGCAAGCGTAAGCGCTCCCCAGCTGTTATCCACAAGAAATCTCgcaacgaagacgacgacgaggacctcACTCGCGACCTAGACGATCCCCCAGCCGAGCCCAATGTCCAGGAGGTGGTCAAATCGAACGCTGCTCTCCAATCCACAGCCAGTCCGGCCCCCGGCGGCAAGTCCCGTGGCGACAACGACATGATGCCCATCAAGGGCGGCACCATGACCGATCTGGACGATGAAATGACCGGAGGCAGTGCCGCCCAGGCCCTCTCCACGGGCGATGGCGACAACTCGCAGACCGGCAAGaccagcgacaacagcaacacccaAGAATTCTCATCCTCCGCCAAGGAGGACATGGAGGACAATGTGACCGAGCAAACCCACCACATCATTGTGCCCTCCTACTCCGCCTGGTTCGACTACAACTCCATCCATGTCATCGAGAAGCGGGCCATGCCCGAGTTCTTCAACAGCAAGAACAAATCCAAGACCCCCGAAATCTACATGGCCTACAGGAACTTTATGATCGACACCTATCGCTTGAATCCTACGGAGTACTTGACCAGCACGGCCTGCCGGCGGAACTTGGCCGGCGACGTGTGCGCCATTATGCGGGTGCATGCCTTCCTCGAGCAGTGGGGCCTGATCAACTACCAGATCGATGCGGACCTCAGGCCGACGCCCATGGGACCGCCGCCCACCTCCCACTTTCATATTCTGTCGGACACGCCGTCCGGGCTGCAGGCCATTAACCCCCAGAAGACGCAGCAGCCGTCGGCAGCCAAGACTCTTTTGGATCTGGACAAGAAGCCGCTGGGCAAAGAGAGCTCTGTGGAGCTGGACAAGaccggctcgctggctggcatcAAGACAGAGGCTTTGGAGAACGGGGCCCCCGGGACGGGTCTGAGTTCGGGGGTCAGCCAGTTTGGCTTGAAATTGGATCAGTACGCCAAGAAGCCGGCGGCCATGAAGAACCGCACGGCGGCCAGTTTGTCGCGCGAGTGGACCGACCAGGAgactctgctgctgctcgagggcCTGGAGATGCACAAGGACGACTGGAACAAGGTGTGCGAGCATGTGGGCACTCGCACCCAGGACGAGTGCATTCTGCACTTCCTGCGCTTGCCCATCGAGGACCCCTACTTGGAGGACGATGGCGGGTTCCTCGGGCCACTCGGCTGCCAGCCCATCCCCTTCAGCAAATCGGGCAATCCGATTATGTCGACGGTGGCCTTCTTGGCCTCTGTCGTTGATCCCCGggtggctgcggccgcggccaaggcggccatgGAGGAGTTTGCGGCCATCAAGGACGAAGTGCCGGCCACGATCATGGACAACCACATGAAGAACGTGGAGAAGGCTTCGGCCGGCGGGAAATTCAATCCCAACTTCGGGCTGGCCAACAGCGGCATCGCCGGCACAGGCAACGAcaaggaggacgaggagaacAAGGAgacgggcagcagcggcagccagtcggccagcaaTGACGAGGAAATGAAGGATCTTACGAAGAAAGAAGACGCCAACGACGCCAACAAGTCCAAAGACAAGACGAAAACGGATGCCAGCCCAGAAAGCTCTACGGCCGCTGCCGgtgaaaagaaatctaaagaatCTACGACCTCAACGGCCAGCACAGCCAACGAAAAAGCTGACAAGTCAGACAAAACCTCGACCAACTCATCCTCCTCCCCACCCACAGAGCCTGGCGCGTCGAGCGTTAGCACCGACGTAGACGCCATCAAAACGGAGGACACCAGCGCCGACGGCGAGACCAAGGACGGCAGCGACAATGCCTCAGCCGCTGGCAATGCCAGCAAGGACAGCTCGGCAGCAACTGGCGACACTTTCAGCGAGAACAACATGCAGtcggcggccgcagctgctttGGCCTCGGCGGCCGTCAAGGCCAAGCACCTGGCCGCCCTGGAAGAGCGCAAGATCAAGTCCCTGGTGGCCCTGCTCGTGGAGACCCAAATGAAGAAGCTGGAGATCAAATTGCGACACTTCGAAGAGCTCGAGGCCACCATGGAGCGCGAGCGCGAGGGCCTCGAGtaccagcgccagcagctgatCACCGAGCGCCAGCAGTTCCACTTGGAGCAGCTGAAAGCGGCCGAGTTCCGTGCCCGCCAGCAGGCCCACCATCGTCTCCAGCAGGAgatgcagcagcagggccagcagggACCCGTCGTCGGTGGTCCCATGATgatgcagcaacagcagcagcaactccagcagcagcaacatccgcaccagcagcagcagcagccgccgcatccgcatgcccagcagcagcagccagtgCAAATGCCGGGGGCCTCGGCCGTGCCGCATCCTCAGTCTCTGCCGCCGCACCACTTGGCAGTCGGTCAGCCGCCAGTGATGCCGCCCAATGGCCCGCCGCAGGGTCTGCCGCCGAACGCAGCCCCGCCAGGCGCTGTGCCAGCCGTGGTGGCGCCGATGCCAACAGGCGAACAGGCGCCAGTCTCAGGGCCGCCAATTCAGGCGGCTCCCACGCCGATGGacACTACGCCGcctgtggtggtggcggcgccgccagacgcggcggcggccgcagcagtGGTCGTGGGGCAGCCgttgccaccagcagccaaccTGCCGCCAGTGGGTGTGGCGACTGCAGCGCCTCCTTCTTAA
- Protein Sequence
- MNAHGPKKDGNPNIDFFQSAETLQGFESIRQWLQKNCKKYLANSSDPITKESLAQLLIQFLQYVENKLGKNSAEPPATRIPMRCFLDFKNGGGLCIIFSTMFRFRAEQRGKKFDFSIGKNPSRKDPNIQLLIEIEQALVEADLYRIPYIYIRPEIEKGFESRLREILDNRRVEIVTDEEDATHIVYPVVDPHPDEYARPIFKRGNHVMLHWYYFPESYDSWAVNNFDLPENIPDNPESPAERWRVSASWILDLEQYNEWMAEEDYEVDEQGKKKMHKQRMSIDDFMAFGDEKKKPTPTTGKQKRRRSPSPNTSSSKPGKRKRSPAVIHKKSRNEDDDEDLTRDLDDPPAEPNVQEVVKSNAALQSTASPAPGGKSRGDNDMMPIKGGTMTDLDDEMTGGSAAQALSTGDGDNSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADLRPTPMGPPPTSHFHILSDTPSGLQAINPQKTQQPSAAKTLLDLDKKPLGKESSVELDKTGSLAGIKTEALENGAPGTGLSSGVSQFGLKLDQYAKKPAAMKNRTAASLSREWTDQETLLLLEGLEMHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASAGGKFNPNFGLANSGIAGTGNDKEDEENKETGSSGSQSASNDEEMKDLTKKEDANDANKSKDKTKTDASPESSTAAAGEKKSKESTTSTASTANEKADKSDKTSTNSSSSPPTEPGASSVSTDVDAIKTEDTSADGETKDGSDNASAAGNASKDSSAATGDTFSENNMQSAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQEMQQQGQQGPVVGGPMMMQQQQQQLQQQQHPHQQQQQPPHPHAQQQQPVQMPGASAVPHPQSLPPHHLAVGQPPVMPPNGPPQGLPPNAAPPGAVPAVVAPMPTGEQAPVSGPPIQAAPTPMDTTPPVVVAAPPDAAAAAAVVVGQPLPPAANLPPVGVATAAPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00560967;
- 90% Identity
- -
- 80% Identity
- -