Lsab007912.2
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010001444.1:1-15306[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-10 1.3e-06 28.6 0.0 7 40 559 593 558 596 0.87 2 4 6.4e-14 1.5e-10 41.2 0.1 2 39 608 645 607 648 0.94 3 4 1.5e-17 3.5e-14 52.9 0.0 1 45 662 707 662 707 0.98 4 4 6e-20 1.4e-16 60.5 0.1 1 45 714 759 714 759 0.96
Sequence Information
- Coding Sequence
- GGTCTCCTGCGCACCGCCGAGCAGTTGAAAATCAAAGGCCTCTGCGAAACGGCCGAGAACGCGGACGACCTCAACGacgccgccacagccaccatCACAGTCTCCGAGAACATCCAGCAGTCCGTGGTAGCCACTCTCGTCTCcggcgccccctcccccagcccagaacaccagcagcaacaacagcaacaattgcatgtccagcaccaacaacaacagcagcagccaccctcccagcagctggtcaACGCCGCTCTGATCTCCCAGCACCCCAGCAGCCAGTTAGGCGCCTCCGCAGCCGGCCAGCTGTTGACCACCAGctccgccagcggcggccccgTGGGCCAGCCCGCCCGCAAGTCGCGCTTGCGCAGGCGCTCCAAGTCGCCGGACCTGctcagccaacagcagcaaccccagccagcccatcaCCACGCGCAGACCATCTTGATCCAGGGCCAGAATCAGACCTCGATTGTCAGTTTGCAGCAGACGGCCGACGGCAATTATATCCCGGTAGCCAGTGGCGGAGGAGCAGGGCCAAGTGGAGGCGGCAgtggggcagccggcggtggcagcagtgCTgtgggcggcgacggcaacgagtCGGACACCGAGAAGCCGACGAAAATCTGCAAGACCGAATTGTCGGTGGCATCGCCGGCATCGAACTCCTCGACCTCGAATAATGCGGGCGGCGTGCACGCCGGCGGAGGAGTAACTGCAACCGGGCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGAACGGCGGCCTGTTGGGCGTGCCCATGGGCTTCCTGGACTTCACACCCGAACCACCAGCACCATCGGCCACCCCAGTCAACGTCACTGAGCACGTCGATCTCTCCTGCAATCCCAGCACGGATACGCGCGACCTTTCAAatCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATCCATCGGCTGGATCAATCTCCCATGCATTCAATAGCCCATCATCACACCGGCGATGAGAGCAACTCGAATCTCGTCCAGCATATCAAGTCCGAGGTGATcgaggccaagcagcagcagctggctgcccagcagcagcaacagcagcagcagcaacaacagcagcagcagcaacaacagcagcaacatgcCCATCACCAGGCCCACCAAGCGCAGGCGCAACATGCCCACCatcaggcccagcagcatcaCTTGCATCATGCCCAGCAGATGCTGGCCCAGagccaggcccagcagcagcagcagcagcaacaacagcagcagcaacatcatccGCATGGCCAGCATCCCGGGCATCCCACACATGCGGACATCACGGGGGCCACCGTCATGGAGATTGATCCCAGCCAGATTAAGCACGAGCCCGGCATGATTATAACGCCGGAGATCGTCAACATGATGTCCTCCGGGCACATGGAAATGTACAACTCGGATACCAGCGAGGATTCCATGATGATTGCCAATGGTTCGCCGCACGATCAAAATGAGCCGCATTACACGAATTTGGATCAACAGCATGGCGGCCTCGGAGTCAGCggtggggctggcggcggcggcggcggcggtattggtggtggtggtggtgcgggtggtggtggtggtggtggtgttaTTGGTAGCGAGAAAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCCTCTGCCATTTATGGCATCCCATCGACCACATTGTGGCAGCGGGCTCATCGTTTGGGCATCGAAACGCCAAAGAAGGAGGGCGGCACCAAATCGTGGAACGAAGATGCATTACAAAATGCCTTGGAAGCCCTACGATCTGGTCAAATATCCGCCAATAAAGCATCCAAAGCCTTTGGCATCCCATCCTCGACTTTATACAAAATCGCCCGGCGCGAGGGCATTCGCCTGGCGGCGCCCTTCAATGCCGCCCCAACCACCTGGACTCCCGAGGATTTGGAGCGCGCCTTGGAGGCGATACGGGCCGGTAATACGTCCGTGCAAAAGGCCAGCGCTGAATTTGGCATACCGACAGGAACACTTTACGGACGCTGCAAACGCGAGGGCATTGAATTGTCCCGTTCCAATCCCACGCCCTGGTCCGAAGACGCCATGAACGAGGCCCTCAATTCCGTGCGGGTGGGGCAAATGTCCATCAACCAGGCGGCCATACACTACAACCTGCCCTACAGCTCGCTCTACGGACGCTTCAAGCGCGGCAAATACGAAATGAGCAACGCCAGCGGCGTCTCCCTCAACAGCACCTCGGGCAACACCACCGGCAGCATTGAGATCATCGAGCACAGTCAAGAGAACTCGCTGCACAtgctccagcagcagttcCCCTACAGCCCCTCGCCGCATCCATCGACGCCGCAGCATCACAGCACCCCCCAGGGACCGCCCACGCCGCAGCATATGCAACAGCACGTGGTGCATATGCAGCAGCAGTCACCGCATCCGGGCcatccccaccagcagcacatCCAGCAGCAGGATGTGGTCACCTCCAGCAGCCAAGTGGTGCatcccggccagcagcagcagctccagcaaatCTATCAGCACCACGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- GLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQSVVATLVSGAPSPSPEHQQQQQQQLHVQHQQQQQQPPSQQLVNAALISQHPSSQLGASAAGQLLTTSSASGGPVGQPARKSRLRRRSKSPDLLSQQQQPQPAHHHAQTILIQGQNQTSIVSLQQTADGNYIPVASGGGAGPSGGGSGAAGGGSSAVGGDGNESDTEKPTKICKTELSVASPASNSSTSNNAGGVHAGGGVTATGQAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVNVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIEAKQQQLAAQQQQQQQQQQQQQQQQQQQHAHHQAHQAQAQHAHHQAQQHHLHHAQQMLAQSQAQQQQQQQQQQQQHHPHGQHPGHPTHADITGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMEMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGVSGGAGGGGGGGIGGGGGAGGGGGGGVIGSEKALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEMSNASGVSLNSTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPSTPQHHSTPQGPPTPQHMQQHVVHMQQQSPHPGHPHQQHIQQQDVVTSSSQVVHPGQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01318949;
- 90% Identity
- -
- 80% Identity
- -