Llae014659.1
Basic Information
- Insect
- Lissagria laeviuscula
- Gene Symbol
- -
- Assembly
- GCA_030264695.1
- Location
- JARJDU010034717.1:8299-9527[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-05 0.6 10.5 0.0 21 44 147 170 141 177 0.90 2 3 9.6e-05 2 8.8 0.0 11 43 192 225 188 230 0.80 3 3 0.00011 2.4 8.6 0.2 21 44 291 314 288 318 0.91
Sequence Information
- Coding Sequence
- ATGAGCGATTTACCAACATATGAAGGATGTAGAATATGCATGACTAATCATAAAGCAGATAACTTACAATTACTGGTAGAAATTACCATCGCCGACAACAAAACCAACATAAAACTGATCGACTTCATTGAGAAAATCGTCGATATTCATCTTTCACAGTCATCGAGAATTTGTCAACAATGTATAAATGCCTTTACGATCGTTCATGCCTTAGCTGAAACTtgcaaaaatagtaaaaacttaTTGGTTGAATTGAATGACAATAAAAACCAAACACATTTCAAATGCAAGCAATGTGAGAAAATATGTTCCACAAAACAAAGCTTTGCTAGGCATTCAAAAACTCATTTagtaaagaagaaaacattttcttgTGATGTTTGCAGGAAGGAATTCTTATATCAAAGCATGTTATCAGAGCATTATAGGATACATACTGGAGAGAAACCTTTTCTGTGTCCCATCTGTGGGAAAGCTTTCAAACAGACTGGAAATCTTGCTATTCATGTCAAATCACATTCAGGATTGAAAGTTTTCAAGTGTGAGATATGCACAGAGGACTTTGTATCATCAGGTACTTTGAAAGTACACATGAGAATTCATACTGGTGAAAGACCTTACATGTGTGATACATGTGgaaaatcatttaaacaatCAACTGACTTGAAAAGACATAAGCTGAGTCATGAACCAATGAGTTCGAGAAGAACTCTTTGTATTGTTTGTGGCAAGAAGTATACAACAACAGGACAGTTGACTATACACATGCGTTCCCACACGGGAGAAAAACCCTATAAATGTTCTAATTCTATTTGTAAGAAAGCTTTCATTACAAGAGCAATGTTAGTGAAACACCTAAGAATTCATACTGGAGAGAAGCCATATAAGTGCAATATTTGCCAGAAACAGTTCAATCAAAGTAGTACATTAAACAGACATCAAAAAACGCACAAATCGCAGGTTTTCGAAGAATGTAATAACTATAACATTATTGTAACTgatgatgatttattatatcagTCACTGTAA
- Protein Sequence
- MSDLPTYEGCRICMTNHKADNLQLLVEITIADNKTNIKLIDFIEKIVDIHLSQSSRICQQCINAFTIVHALAETCKNSKNLLVELNDNKNQTHFKCKQCEKICSTKQSFARHSKTHLVKKKTFSCDVCRKEFLYQSMLSEHYRIHTGEKPFLCPICGKAFKQTGNLAIHVKSHSGLKVFKCEICTEDFVSSGTLKVHMRIHTGERPYMCDTCGKSFKQSTDLKRHKLSHEPMSSRRTLCIVCGKKYTTTGQLTIHMRSHTGEKPYKCSNSICKKAFITRAMLVKHLRIHTGEKPYKCNICQKQFNQSSTLNRHQKTHKSQVFEECNNYNIIVTDDDLLYQSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904269;
- 90% Identity
- iTF_00904269;
- 80% Identity
- iTF_00904269;