Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: Rreb1
Assembly: GCA_030264695.1
Location: JARJDU010021235.1:1-6234[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.2e-05 0.0013 19.3 1.0 1 23 86 108 86 108 0.98

2 16 0.0004 0.044 14.5 0.2 1 23 122 144 122 144 0.98

3 16 3.7e-06 0.0004 20.9 4.3 1 23 150 172 150 172 0.99

4 16 7.9 8.6e+02 1.0 2.4 1 23 232 256 232 256 0.80

5 16 0.022 2.3 9.0 5.1 2 23 262 284 262 284 0.97

6 16 0.62 68 4.4 1.3 1 20 333 352 333 354 0.83

7 16 0.0074 0.81 10.5 0.2 1 23 478 500 478 500 0.98

8 16 0.00033 0.036 14.8 0.9 1 23 509 531 509 531 0.99

9 16 0.00053 0.058 14.1 3.1 1 23 537 560 537 560 0.97

10 16 0.0012 0.14 12.9 2.1 1 23 898 921 898 921 0.96

11 16 0.00032 0.035 14.8 0.4 2 23 1144 1165 1143 1165 0.97

12 16 0.081 8.8 7.2 6.3 1 23 1171 1194 1171 1194 0.97

13 16 0.00097 0.11 13.3 2.4 1 23 1219 1243 1219 1243 0.96

14 16 3.7 4e+02 2.0 3.6 1 23 1297 1320 1297 1320 0.83

15 16 0.011 1.2 10.0 0.4 3 23 1368 1388 1366 1388 0.93

16 16 0.0048 0.53 11.1 5.9 1 23 1394 1416 1394 1416 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.2e-05	0.0013	19.3	1.0	1	23	86	108	86	108	0.98
2	16	0.0004	0.044	14.5	0.2	1	23	122	144	122	144	0.98
3	16	3.7e-06	0.0004	20.9	4.3	1	23	150	172	150	172	0.99
4	16	7.9	8.6e+02	1.0	2.4	1	23	232	256	232	256	0.80
5	16	0.022	2.3	9.0	5.1	2	23	262	284	262	284	0.97
6	16	0.62	68	4.4	1.3	1	20	333	352	333	354	0.83
7	16	0.0074	0.81	10.5	0.2	1	23	478	500	478	500	0.98
8	16	0.00033	0.036	14.8	0.9	1	23	509	531	509	531	0.99
9	16	0.00053	0.058	14.1	3.1	1	23	537	560	537	560	0.97
10	16	0.0012	0.14	12.9	2.1	1	23	898	921	898	921	0.96
11	16	0.00032	0.035	14.8	0.4	2	23	1144	1165	1143	1165	0.97
12	16	0.081	8.8	7.2	6.3	1	23	1171	1194	1171	1194	0.97
13	16	0.00097	0.11	13.3	2.4	1	23	1219	1243	1219	1243	0.96
14	16	3.7	4e+02	2.0	3.6	1	23	1297	1320	1297	1320	0.83
15	16	0.011	1.2	10.0	0.4	3	23	1368	1388	1366	1388	0.93
16	16	0.0048	0.53	11.1	5.9	1	23	1394	1416	1394	1416	0.98

Sequence Information

Coding Sequence: GATAGTGACGAGATGCAAGGTGTACTTTGCCTACCTCCAGGACAATTGGACCGCACCATagtaacagcaacaacaaaaatcgatGAAATGGAAGTAACATCGGAACCATTAACCAAAGAAATAAGCCAAAGCGATTCAGGAATCTTTTCCGCAACAGGAAACTCGACGTTTCCCAGCTGCGCCACAGACGAGAATAGAACACAATCAGAGAATGAAACGGACAATCGATCCGACTGCAGTTCACCCGATCGAAAATTCGTATGTCCCATTTGCGACCGAATGCTCACCTCGCAACACGAATTCACGCTGCATATAAGATCGCACAATAACGATTCGGAAGCACCGCAAGATCCAGAGAAGGGCTACACTTGCAGGATATGCGCGAAAGTCTTAAGCTCTAGCTCCAGCCTCGATCGCCACGTCCTAGTACATAGCGGCGAACGTCCATTCACATGCAAATATTGCGGAGACACCTTTACAACTAACGGGAATATGCATCGACATATGCGAACGCACAAATCCGACAATTATGAATCCGACGGAAGTGTGGACAGCACCGTCAGTAGTGAATCCAAAAGCATCgaatttaacaataacaaagttGACAACAAGTACGAGAATAAGAGAAAGTTTGATGGAGACGAAGGCTATCCCGCGAGGAAGAAGCCACATTTGGATATTGAAGATGAAATATTCAAGTGTCCTGTGTGCTGTCGAGATGACTTCAACACCAAGAAATCATTGGAGGTCCATCTGGAAGATAATCATCCGGATTATCCAGCAAAATGCCATCAATGCAATCAGTTTTTCAATAATCAAAAACGTcttaattatcataaactaACGGTGCACGCGGACGACTCGAACGGAAAATCCAAAAATGTCGTCGTGGGCTTCAAACATATCGATTACGTTGATTTCACGAGCGAAAAGTTTCCGCATATCGCGCGACACGAATGCGAGAAAGTTTTCCACAAGTCAGCGTCCGGTCCCAAATATACTTGCAACAAATGCTCAAGAGCATTTCCCTGCGACAAATCGCTCGAATACCATTTACAAGAATGTGGATCCAGTCGAGAACGTCCGATTGACTATCTCCGAGCACCGGATAGCATCAAACGCGAAGAGTTTTTCCATCGTTTGGATTTGGAGAATAAACAGCAGGCATTGAGGTCACTACCATTGATGTTAAGCGATGCAGAGATAACTAAAACTATACCCAGATTGGAGGAGGCCATGAAAAACATGGAATACCCTAAGGATCTAGCTGATATACAATCAATCATATCCCTAACTAATGGTAATTTGTTCCCACATCTTCAGAGTAAGTCCAACAGCGAAATGTCCCAATTGGAAAGTGAAAAAACCGAGGAGGAAGAATCTCAGGATTTGTTTGCACAAGAATTTCGCAAAATGAAACTTCGAGGGGAATTTCCTTGTAGATTATGTACAGCAGTCTTTCCTAATCTTCGCGCTCTCAAAGGACATAATCGCACTCATTTGAATAGTGCACATAATGGTACTTACAGATGCAATATGTGTCCGCATTCTTCATTAGACAAAGCTGCTCTTATCCGTCACATGCGTACGCATAACGGCGACCGTCCGTATGAATGCTCTCTATGTAACTATGCCTTCACCACAAAGGCCAATTGCGAGAGACATCTTCGTAACAGACATTCAAAGAACACTCGGGATGAAGTTAAAAAAGCTATTATATACCACCCCTCCGAGGATCCTACCAACGACGATGCGAACAAGTCCCTAGACTCCAAGAAACTGAACACTAGCAGTAACTCTATCGACTCTTCAGAACTCAATTCAGTTCGAAGTTTAACACCAACAAGTATCCCATCGGCATTTCCTGATGTCCAAATTGCAAAGGACTATTCATCATTGTTTCCCTTAGCTCCAAAAATGCCAACTGTCAATGATTTAATCTCTGAGAATATTAAAGCTATGAGTGAATCCCGCAAAGAAACCAGCAACTGGCCATTACAATTCGCCACGTCGACGCCTAACAAAACCGTTCCGAATATTCGTGTTAAAGACGTGAGTGTCCTAAAGGAAATTCCTGAACACGATGGATATTCTGATACTGATGATGTAGAGCCCATGGTTCTTGATCTTAGCAAAAAACCGAAACCACCGAAGGaacaaaaacaagagaaaatcACCGAAGTTCCGGATAATAAAATCCCAATTCCTAATATTCCTATGACAGATATTCTAACTCAACAGCTTCTCAAAGGCGCGCAACCAGCAGATACCTTCCTTTTAGCTGCACAATTAGCTTCTTGGTACAGAAGTGGCTTGCCAACTGTAATGCCTGGTTTCCCTTTGAATCCTTTGATGATACCTCCTATGCTTCCCGACTCTAATCTGCTTCCGCCCGAGATGAAGGAACGTCTTCAACGGCAATTGTCTGGCGGTGGCGTCAAAAACATCTACCCACCGAATTACCCACTCTTCAGCGACATGAAAATGGAGTCTCAACCGCCTCCATCAGATGAATTGAAACCATTATCTTTACATATCGACAACTACAACGAAAATGTGCAGATGAAAGGGAGTCCAGTCATGACACCCAAAGCCGAATTACTGCAGTCACCCAACTCGATTAAAATGGTGATTAAGAATGGTGTTCTCATGCCAAAACAGAAACAACGTCGTTACCGTACCGAAAGGCCGTTTTCCTGCGAACATTGTGCAGCTAGATTTACTCTTAGATCAAATATGGAGCGTCATATTAAGCAACAACATCCACAGTTTTGGTCACAACGACAAAGGTCAGCGATGGGTCAACCTGGAAGGAAACCACACATGCCTTCTGTTATGAAAAGCCCGATTTGTGAATTAAGTATTCCTACTTATGAGGCAAAATCTCATGAGGATGATAATAAGGCGTCGATTTCGGAGACGTTGAAGTATGCCATATTGTCGCAGCATTTGCGCGCCGCTCAAGAATCGCAGCAAGTGAAGAAAGAAGATCCGGAGGAGGAAGATGCGCTAGTTATTGATGAGCCTGAAGAGACACCAGTACCTGTGTCTGAAGCCCCAAGACATGAAACACCTAAATCACGAATTTtggaagaaaaattgaaagaattgAGAGATAGACagttaatgaaagaaaaggAGCAGGAAGATAATGAGAAGAAAGGAGATGAGACATCGGATTTGGTACCTGTGTCCAGGTTATTGGTCAATGCATCCCAGCAACAACATCAATTCAAGGAGTATTTCCGTCCTGAGCATGAGGAACATGAAAATGAGATTATCAGTGAGGAGGATGAAGAAGGTCTTGTTGCTAGTGGAAGTACCAGCGAAGGAAATTCTGGCACCGACGAAAATAGatcTGAAAGTGACAATGTGACAAATCCTCCGGAAAAGAAAAAGTCTGCATATTCCCTAGCACCTAATCGAGTATCCTGTCCATATTGTAGCAGGAAGTTCCCTTGGACATCATCCCTACGCCGTCACATCCTGACTCATACTGGTCAGAAGCCATTCAAATGCAGCCATTGTCCATTGCTCTTCACCACAAAATCCAATTGCGATCGCCATTTGCTTCGCAAGCATGGAAATACAGCGACGACAATCACTAACGAGAATGCAAACAGTTTCATGATGCGTAACGTCCCCGAACGACCTTTCAAATGTTCCACATGTCCATCCAGCACATTCTCAACTTACTCGAATCTTAAAAAGCATATGATTTCCAAGCACGGAGCGCAAGATGACCGTCAAGGGTACGAAGCAGGAAGCTCTGAGGATGAGAAAAACAACAGCGATCATAAATCCGACTGGGAGTCGCAGATCTCGCATTCGAAATTAAGCCTCATGCCCGAGAATAATTCACATCTAACACAGAATTCCGACCTTCCGTTTAAATGTCACCTTTGTGATAACTCATTCGGCGAGCGACAGGAATGCCTTGATCATATCAAAGACAAACATGCATCGGAATACGATCTGCTTATGAGCAAAAACGCTTTGGATGCGAATGCATCTACTCCGGAAGATGGGCACAACAACGATGACGAAGACAACGATACTATTAGAGGTAAATTCCCGGATTATTCCAATCGAAAAGTGATTTGCGCTTTTTGTATGAGACGGTTTTGGTCGGCGGAGGATCTTCGGAGACATATGAGAACTCATACAGGAGAAAGACCGTTTAGCTGTGACATTTGCAGAAGGAGATTTACATTAAAGCATAGCATGCTTAGACATCGCAAGAAGCATAATCTGAGTTTTGGTGGACAACCGGATAACAATCAAAGCGACGAGGAAGTCTTTGAGAAGAAGGTAGCGAGTAACAATGCAAATAGTCCTATTGAATCTTCTGATAAAGAGAAGGAAGATTCGGATGTTAATGAAGGTGGGAGTGACttaataagcaatttattaGGGATTAGAGATCGCTCATTGATCGAGCAAGTTTTGACTGGTTCGGCTGATAATGCAGCGAAACTATTAGGTGTTGGTAAGGAATAG
Protein Sequence: DSDEMQGVLCLPPGQLDRTIVTATTKIDEMEVTSEPLTKEISQSDSGIFSATGNSTFPSCATDENRTQSENETDNRSDCSSPDRKFVCPICDRMLTSQHEFTLHIRSHNNDSEAPQDPEKGYTCRICAKVLSSSSSLDRHVLVHSGERPFTCKYCGDTFTTNGNMHRHMRTHKSDNYESDGSVDSTVSSESKSIEFNNNKVDNKYENKRKFDGDEGYPARKKPHLDIEDEIFKCPVCCRDDFNTKKSLEVHLEDNHPDYPAKCHQCNQFFNNQKRLNYHKLTVHADDSNGKSKNVVVGFKHIDYVDFTSEKFPHIARHECEKVFHKSASGPKYTCNKCSRAFPCDKSLEYHLQECGSSRERPIDYLRAPDSIKREEFFHRLDLENKQQALRSLPLMLSDAEITKTIPRLEEAMKNMEYPKDLADIQSIISLTNGNLFPHLQSKSNSEMSQLESEKTEEEESQDLFAQEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRTHLNSAHNGTYRCNMCPHSSLDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHSKNTRDEVKKAIIYHPSEDPTNDDANKSLDSKKLNTSSNSIDSSELNSVRSLTPTSIPSAFPDVQIAKDYSSLFPLAPKMPTVNDLISENIKAMSESRKETSNWPLQFATSTPNKTVPNIRVKDVSVLKEIPEHDGYSDTDDVEPMVLDLSKKPKPPKEQKQEKITEVPDNKIPIPNIPMTDILTQQLLKGAQPADTFLLAAQLASWYRSGLPTVMPGFPLNPLMIPPMLPDSNLLPPEMKERLQRQLSGGGVKNIYPPNYPLFSDMKMESQPPPSDELKPLSLHIDNYNENVQMKGSPVMTPKAELLQSPNSIKMVIKNGVLMPKQKQRRYRTERPFSCEHCAARFTLRSNMERHIKQQHPQFWSQRQRSAMGQPGRKPHMPSVMKSPICELSIPTYEAKSHEDDNKASISETLKYAILSQHLRAAQESQQVKKEDPEEEDALVIDEPEETPVPVSEAPRHETPKSRILEEKLKELRDRQLMKEKEQEDNEKKGDETSDLVPVSRLLVNASQQQHQFKEYFRPEHEEHENEIISEEDEEGLVASGSTSEGNSGTDENRSESDNVTNPPEKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNTATTITNENANSFMMRNVPERPFKCSTCPSSTFSTYSNLKKHMISKHGAQDDRQGYEAGSSEDEKNNSDHKSDWESQISHSKLSLMPENNSHLTQNSDLPFKCHLCDNSFGERQECLDHIKDKHASEYDLLMSKNALDANASTPEDGHNNDDEDNDTIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNLSFGGQPDNNQSDEEVFEKKVASNNANSPIESSDKEKEDSDVNEGGSDLISNLLGIRDRSLIEQVLTGSADNAAKLLGVGKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00629975;
90% Identity: -
80% Identity: -