Lhae043395.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- USP38
- Assembly
- GCA_963971575.1
- Location
- OZ020618.1:47861701-47883691[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-27 7.1e-23 82.4 14.5 1 69 55 124 55 125 0.97 2 3 0.57 4e+04 -3.2 0.1 56 64 590 598 587 600 0.63 3 3 0.069 4.9e+03 -0.3 0.8 52 63 637 648 633 651 0.85
Sequence Information
- Coding Sequence
- ATGTCGAAAGGAGCACCACCACCGTATGGAATTGGACCTCCTCCAGCTGCTCCACCGAGCTATGCACAGGCTGTTGGTGGTGTGCCCCCTTCCAGCCCCTATGTTCCAGCACATTCATTTTCAGGAGGTCCACAGATAGTGACCACAGTAGTTCCATTGGGTCCGCAACCAACGCACATGATCTGTCCACACTGCCACGCTGAGGTCGATACTTCAACAAAAACAGAACCAGGCATTATTGCTTACATATCAGGCATCATCATTTGCTTACTAGGGTGCCCACTCGGATGCTGCCTGATTCCATGCTGCATTGATGAATGCATGGATGTCCATCACAACTGCCCGAACTGCAAGTCCTACCTAGGAAGATTTAGGAGTACTTACACAATGGCTGTGAAACATAAAGTAGTGGATTATGTGGAGAGACCCGTTAATAATTCAATTGATTGTTTGTCTGTGATATTACGTTGTTTAGAGAAATTTAGAAATGATCCTCATTCTATGCCTCAGGGACAAGACCTTATACGAGTGGTTGAGGTTATCGTTCATGGTTTAGGAAAACTTGTTGTACCATGTGAACCCAGTGCGATTGCATCATTTGTAAATGATGTACTTAcgattcaagaatttttatccaCCGTTTGTATGACGAAACAGTACCGTGAACAACTGGTGTTTGCGACGTTAAAAGCTCTGTATCAGGATATTTCAAATCCTAACCTGAAACCTGGAGCTGCTATGTCAGTTGTTTTGGAATTAGTGGAAACAAGTTATATACCTAGTGCAGTGAACCTCATTTTAAACGCAGGGCATAGTGACGCAAGTCTTGAACAAGCATTATTAACGCTTTGTGAATGGTTATTGAATTGGACCAAGACTCCAAATCTCTCTGAATGCGTGTTGGTATTCATGCAAGGATTGGAACAACAGAAACGATTTGACATATTGATAAATGTTACTTTGGGCGTGATAGAGAAATTCTTTGGCTTATTAATGTTACCTGCATATAGAATAGGAATTGGACCGattgttataaaaatgttatcttGTATGCAAGAGACTCCCGAAGCTTTCCATAGAGTAGTTTCTGATTTACCTATGATGGTACAAAGGTTGAAACAAGAAAATTCAGATAGTAGCATTACCTACCTTCAAGATATGGTTAATTTGACTACATGTCTAATGGAACATTTCTCAGGGTACGATGCAATGTACGAACCAGTGAaaaatgcttttaaaatttgCCCACCTACGCCGAACTACAGAACTTACCTTAAATGTCTACCATGGtctaataatattcatttttccatCATCCATTTATCAGAAACTGGCAAAGTTGGCCTTAATAATCTTGGAAATACTTGCTACATGAACAGTGTTTTACAAGCGTTGTTTATGACGAggttgttttcaaataatattctGCTGCACGAGTACAAATGGCCGCTGATTACGAAGCTACAAAGTTTGTTTGCTGTTCTACAGTACTCGACGAGAGTTTCTTATTCCCCAAATGAGATTCTTCAGCTGGCGAGGCCACCTGGATTTCAAAGGGGTCATCAACATGACAGTTCAGAATTTTTAGGATATTTATTAGATGTTTTACATGAACAAGAAAAATCTTTATTAGCTACAAGTAGAAAACCagatgtaaaacttgtattaacAGACAcagatacAAAACAGTCTCAATCTACAAATGTAATAACACAGACAACTGATGCAACAGTTGTTCAGCGTGCATTTGGTGGTCGAGCAGAGACGATATATAAATGTGATGCTTGTGGAACGGAAAGCATACGTGCAGATAACTTCAGAGATTTACAATTATCATTTCCATGTGATTTTACCGAAGGTGAATCAGTGGAGAAATTATTAGAGTACTACCTAAAACCTGAAAAATTATGTGGCGATAACCAGTATCATTGTGAACGATGCAATGGCTTATCAGATGCGGCTAGAATATTTCGAGTAATTCAACCACCAGCACGTCTCGTATTGACACTGAAACATTTTAGGTACGATGCAGGTTCACAACAACGGATAAAACTTCTTCATCGAGTTCAATATAATCAAGTGGTCGAGCTTGCTGGGATTATGTACGAACTGTATGCGGCTGTAGTTCATTGTGGTTCAAGTGTTGATTCTGGACATTATTACACATACGCTAAGGACGGAAAGAAATGGTACAAGTTCAATGATAGTAGCGTATTAAAGAGTTCTTCCGATGAACTGTATGATCTTCAACCTCCAGAAACGCCGTATATTTTGTTCTACAGCAGGGTGGATTGTGAGGAACCAATACCTCTTGAACGAAATCAACTACCACCTTTTATCGAATCGATCATTGTGCGAGATATATCCGAGTATGAATCCGAAAAGATGGCAATCCAGACCCGTTCCGAACCAATTGTCCGTACCTTTTCAAAAGATGATGATCCACCGCCTGGATGTGGAGGAGGAGGACCAATAATTACAAGTGATCGTTTCATATGTTAA
- Protein Sequence
- MSKGAPPPYGIGPPPAAPPSYAQAVGGVPPSSPYVPAHSFSGGPQIVTTVVPLGPQPTHMICPHCHAEVDTSTKTEPGIIAYISGIIICLLGCPLGCCLIPCCIDECMDVHHNCPNCKSYLGRFRSTYTMAVKHKVVDYVERPVNNSIDCLSVILRCLEKFRNDPHSMPQGQDLIRVVEVIVHGLGKLVVPCEPSAIASFVNDVLTIQEFLSTVCMTKQYREQLVFATLKALYQDISNPNLKPGAAMSVVLELVETSYIPSAVNLILNAGHSDASLEQALLTLCEWLLNWTKTPNLSECVLVFMQGLEQQKRFDILINVTLGVIEKFFGLLMLPAYRIGIGPIVIKMLSCMQETPEAFHRVVSDLPMMVQRLKQENSDSSITYLQDMVNLTTCLMEHFSGYDAMYEPVKNAFKICPPTPNYRTYLKCLPWSNNIHFSIIHLSETGKVGLNNLGNTCYMNSVLQALFMTRLFSNNILLHEYKWPLITKLQSLFAVLQYSTRVSYSPNEILQLARPPGFQRGHQHDSSEFLGYLLDVLHEQEKSLLATSRKPDVKLVLTDTDTKQSQSTNVITQTTDATVVQRAFGGRAETIYKCDACGTESIRADNFRDLQLSFPCDFTEGESVEKLLEYYLKPEKLCGDNQYHCERCNGLSDAARIFRVIQPPARLVLTLKHFRYDAGSQQRIKLLHRVQYNQVVELAGIMYELYAAVVHCGSSVDSGHYYTYAKDGKKWYKFNDSSVLKSSSDELYDLQPPETPYILFYSRVDCEEPIPLERNQLPPFIESIIVRDISEYESEKMAIQTRSEPIVRTFSKDDDPPPGCGGGGPIITSDRFIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -