Basic Information

Gene Symbol
-
Assembly
GCA_963971575.1
Location
OZ020611.1:196148199-196149431[+]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.72 1.7e+04 -2.1 0.0 27 45 137 155 136 159 0.73
2 6 0.0014 34 6.6 0.2 21 44 159 182 142 186 0.84
3 6 0.00041 9.6 8.3 0.1 21 47 187 213 183 220 0.86
4 6 0.00071 17 7.6 0.1 21 52 215 246 213 247 0.89
5 6 0.0043 1e+02 5.0 0.1 21 52 243 274 241 275 0.89
6 6 2.8e-05 0.67 12.0 0.1 23 44 273 294 269 304 0.87

Sequence Information

Coding Sequence
ATGAGTGATGAAAATAACGTAGCTGTATATGAGGAAGTTACCGACACTTTAACTTATCTACcgtttataaaaatagaacaagATGGTTCAGTTTTAGTAGACGGTGAACCAAGTGACCAAGATATAATAtcacaaataaatatagaatcTGCTAAAGTATTAGTGTTACCATATCagtcagaaaaaatattgaatgattTAGGTGTTCAGTTAGAAGAAAATGAAGGTTACACAGAATTAATAGAAGGAATATCAGAAAGTGTAGTAGAAAACCAAAATGAGGAGGTAGATGTCTCTGAAACGATGTTGCACGACCATAATTACGAGGAAGGCGGAAGGCAAGATCCGTTAGATAATAACTACACTTGcaactttatatttgaaagtGTTCCATCAGGGAGATTTCAATGTGAGGTATGTTCGAAAGGTTTCAATACACCAGCGAGTTTAAAACGCCATTTACGCACACATACCGGGGAACGTCCATTCCAATGTCAGATTTGCGAGAAGTATTTTTCACAGCAAAGTAACTTGTGGAAACATGTTCGCACGCATACAGGTGAACGACCGTTTGAATGTCCGCactgtaataaaaaattctctCAGCGTGCCAATATGAAAAAACACCTAGTTATACATACTGGTGAACGCccgtttgtttgttttttatgttcGCGAGCGTTTACGCAACAAGCGAATCTAAGCAAACATATGCGACTACATACAGGAGAGAAACCGTTCCGATGTACTTACTGTGAAAAAAGTTTTACGCAGAGATCTAATCTTCAGAAACATGAACACCTACACGAAGGTATTAAACCTTATACATGTGAAATATGTTTCCAAGCGTTCACCCAACAAAGTAATCTTAAAAAACATGAGATGATGCATAAAAATGTACGGAAATATGTTTGTGATATATGTCTTAAGTCTTACGTGCAAAAAGTTAGTTTAATTAAACACAGGCAGCGTTGTATTAGAGAACATGGTGAGAACGTTGAATATATCATAGGTGAAGAAGGAATGACTGATCAAGAAATTATTAGGCAGTATGAAGAAATGGAGGAAAACGGTTTGgattttgaagaagatattgaAGAGGAAGTTTATGAAGAAACTGATTCTTCTAATATTGAAGGTCAAGAAACGCAGTCGTCTGATGATTGTCGAGAAATTGTTATAAATTGTGATGTGTCTGAACAAATACTGGAAGATCATCCTGCTTACAGctaa
Protein Sequence
MSDENNVAVYEEVTDTLTYLPFIKIEQDGSVLVDGEPSDQDIISQINIESAKVLVLPYQSEKILNDLGVQLEENEGYTELIEGISESVVENQNEEVDVSETMLHDHNYEEGGRQDPLDNNYTCNFIFESVPSGRFQCEVCSKGFNTPASLKRHLRTHTGERPFQCQICEKYFSQQSNLWKHVRTHTGERPFECPHCNKKFSQRANMKKHLVIHTGERPFVCFLCSRAFTQQANLSKHMRLHTGEKPFRCTYCEKSFTQRSNLQKHEHLHEGIKPYTCEICFQAFTQQSNLKKHEMMHKNVRKYVCDICLKSYVQKVSLIKHRQRCIREHGENVEYIIGEEGMTDQEIIRQYEEMEENGLDFEEDIEEEVYEETDSSNIEGQETQSSDDCREIVINCDVSEQILEDHPAYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00903536;
90% Identity
iTF_00903536;
80% Identity
iTF_00903536;