Lhae065195.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020626.1:23571091-23609579[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00095 22 7.2 0.1 21 46 102 127 87 133 0.86 2 4 0.0015 36 6.5 0.1 21 46 164 189 155 194 0.86 3 4 0.00032 7.5 8.7 0.0 21 46 277 302 263 307 0.87 4 4 0.0035 82 5.3 0.0 21 46 435 460 417 467 0.87
Sequence Information
- Coding Sequence
- ATGACTGACGGACATGAAATGAAGACTGAAACAGAGCACATGGCTGAATGGGAGAAAGaGTGCCTCGATACTTGGAAGACAATTTGCTTAACATCTACGGACGACTTGTCCAAGTATCACTATAACACTAACATCATCATCAGTGAGGAGATCGATATCAAGACTGAATGTGGAGATGACGGAGAATATGAGGAGAGTACAGCTGGACAAGATAAAGGTACTGCAACATCTTCCAGTGATCCAGATGAGAGTTGGGCGCCAAAGTCCATTAACAAGTCCAAACAGATCAAAACAACACGAACAACAGAGGCGTGTTATACATGTGATATATGTGAGAAAACATTTGAACAAGCTCGAGATCTTACTGCACATAAATCACTACATACTGACAAGAAGCGATTCAAATCAGGTAGTGCAACATCTTCCAGCGATTCAGATGAGAGTTGGGCGCCCATTAACAAGTCCAAACAGATAAAAACAACACGAACAACAGAAGCATGTTATACATGTGATGTGTGTGAGACAACATTTCAACAAGCTCGAGATCTTACTGCACATAAACCACTACATACTGGCGAGAAacaattcaaatgtgatcaatgtaataaaacatttaatgacAAGAGTGCTCTAATTATGCACAAACGAGTTCATAGTGGCGAAAGACCATTCAAGTGTGAAgagtgtaataaatcatttactcAAAAAGGTGCTCTAGTTATTCACCAACTAGTTCATACTGGTAGTGCAACATCTTCCAGTGATTCAGATGAGAGTTGGGCGCCAAAGTCCATTAACAAGTCCAAACAGATCAAAACAACACGAACAACAGAGGCGTGTTATACATGTGATGTGTGTGAGACAACATTTGAACAATCTCGAGATCTTACTGCACATAAATCACTACATACTGGCGAGAAacgattcaaatgtgatcaatgtaataaagcatttagtcAAAAGAGTGGCCTAATTATGCACAAACGAGTTCATAGTGGcgagagaccattcaaatgtgatcagtgtaataaaacatttactcAAAAGGGTGTTCTGGTTACTCACAAACAAGTTCATACTGGTAGTGCAACATCTTCCAGTGATTCAAATGAGAGTTGGGCGCCAGAGTCCATTAACAAGTCCAAACAGATCAAAACAACATCATCAGAACTCAACAATCCTAAACGATTaccttctggagagaaaccattcaaatGTAGTGCAACATCTTCCAGTGATCCGGATGAGAGTTGGGCGCCAGAGTCCATTAACAAGTCCAACCAGATCAAAACAACACCAACAACAGAAGCATGTTATACATGTGATGTGTGTGAGACAACATTTGATCAAGCTCGAGATCTTGCTGCACATCAACCACTACATACTGGAATCAAAGATGAAGTTACAGAGGACGTTTACCAGGATAATACCAACATAGAGGAGAtatacatcaagtctgaacctgtcgACACCAGTGAAGCTGAAGATGAATCGGAAAATGCAGCTATCgtaaacactggtcagtag
- Protein Sequence
- MTDGHEMKTETEHMAEWEKECLDTWKTICLTSTDDLSKYHYNTNIIISEEIDIKTECGDDGEYEESTAGQDKGTATSSSDPDESWAPKSINKSKQIKTTRTTEACYTCDICEKTFEQARDLTAHKSLHTDKKRFKSGSATSSSDSDESWAPINKSKQIKTTRTTEACYTCDVCETTFQQARDLTAHKPLHTGEKQFKCDQCNKTFNDKSALIMHKRVHSGERPFKCEECNKSFTQKGALVIHQLVHTGSATSSSDSDESWAPKSINKSKQIKTTRTTEACYTCDVCETTFEQSRDLTAHKSLHTGEKRFKCDQCNKAFSQKSGLIMHKRVHSGERPFKCDQCNKTFTQKGVLVTHKQVHTGSATSSSDSNESWAPESINKSKQIKTTSSELNNPKRLPSGEKPFKCSATSSSDPDESWAPESINKSNQIKTTPTTEACYTCDVCETTFDQARDLAAHQPLHTGIKDEVTEDVYQDNTNIEEIYIKSEPVDTSEAEDESENAAIVNTGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00903543;
- 90% Identity
- iTF_00903543;
- 80% Identity
- iTF_00903543;