Lhae013911.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020611.1:223681279-223682665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.5 1.1e+03 2.3 1.0 1 23 135 156 135 156 0.83 2 10 1e-05 0.0025 20.1 0.4 2 23 177 198 176 198 0.97 3 10 0.01 2.4 10.6 6.4 1 23 204 226 204 226 0.98 4 10 4.9e-07 0.00012 24.2 2.3 1 23 232 254 232 254 0.98 5 10 1.5e-06 0.00037 22.7 0.7 1 23 260 282 260 282 0.98 6 10 9.4e-07 0.00023 23.3 0.2 1 23 288 310 288 310 0.98 7 10 2.9e-06 0.0007 21.8 2.2 1 23 332 354 332 354 0.98 8 10 4e-06 0.00096 21.4 0.1 1 23 360 382 360 382 0.98 9 10 2.9e-08 7.1e-06 28.1 1.1 1 23 388 410 388 410 0.98 10 10 9.3e-07 0.00022 23.4 1.4 1 23 416 438 416 438 0.98
Sequence Information
- Coding Sequence
- atgcCACAAAACATCATGGTTTTAAGTTCAGTTAAGATTGATTATCAAGACGGACTTTCACAATTAATATGTAACAACTGCATAGATGAACTGAATGTAGCTATTAATTTTAAGAACAAATGTGAAgaatcatatttaaaactttgtgATTATTATCGTAATGAAACTGGAAGCCCGATTCAAGATACAAATGATACGTTTGAATATTATACAGATGAAGTAAAGGAATTGagtaatatacattctaaaacagAGAATTCATATAGAATTATTTCTCGAGAACATATAATTGAAGGACGTACAGAATTAATAAATGTGATAGAATGCTTAACGTGTTCGAAGCaggaaataaatttagaaaaatttcagGAACATAAATGTGATTTAAATGTACAATATGTGTATACTTGTAACGtttgtttgaaaaatatacCTGCAGAAGAATATGATAATCATTTAAAAAGACACAAAGATAAAGATCGTGAAAAAACTGATGTAAGCAATTTGGAAACGAAGAAAAAAGTTCTGCAGTGTGAATTTTGTGGTAAAATTACTCAGTATCGTTCAGAATTGGTTCGTCATATGCGTATACACAGTGGAGATCgcccatttaaatgtgaaatttgttttaaaacttttcgATGTAAAGCATTtctaacaaaacattttttaacacATTCCGGTGAGAAAATACACCAATGCTTATACTGTCCGAAAAGCTTTGTGATTAAAAGTAACTTAACGCAACACATGCGTTTACATACTAATGAAAAGAAGTACAACTGTAGTATTTgcggtaaaaaatttaaagcagCACGCACACTTagaaatcatattaaaattcaCACTGGAGAACGTAATTACCCTTGTGAGATCTGTGATAAAGCTTTTGTAAACGAGTTTGATCTACGACGACATGTGAAATTGCATGATAAATATAAAGCAATCTCTGAAGGAACGTACGATAAATCAAATGAACCACCAAAACAACTGCACCAATGTGAGCATTGTGGTAAATTTGTGCCATCTCGTGGAGATTTAACAAAACATCTTCGTGTTCATACGAaagagagaccatttaaatgtgatattTGTGGAAAAGCATTTTCTGGAACAAGTGGATTAGCGGTTCATAGTAGGATTCATACGGGGGCTAAACCGTATGTTTGTAATCATTGTGGGGCTTCGTTTACGCAGTCATCAAACTTAAAGGTGCATGTTAGATTACACACAGGTGTTAAACCATACGCTTGTTCTATatgtagtaaaaattttaataggaaTAGAGATTTGGTTAGACATTTAAGGAAACATGCAACAGAGAaagtataa
- Protein Sequence
- MPQNIMVLSSVKIDYQDGLSQLICNNCIDELNVAINFKNKCEESYLKLCDYYRNETGSPIQDTNDTFEYYTDEVKELSNIHSKTENSYRIISREHIIEGRTELINVIECLTCSKQEINLEKFQEHKCDLNVQYVYTCNVCLKNIPAEEYDNHLKRHKDKDREKTDVSNLETKKKVLQCEFCGKITQYRSELVRHMRIHSGDRPFKCEICFKTFRCKAFLTKHFLTHSGEKIHQCLYCPKSFVIKSNLTQHMRLHTNEKKYNCSICGKKFKAARTLRNHIKIHTGERNYPCEICDKAFVNEFDLRRHVKLHDKYKAISEGTYDKSNEPPKQLHQCEHCGKFVPSRGDLTKHLRVHTKERPFKCDICGKAFSGTSGLAVHSRIHTGAKPYVCNHCGASFTQSSNLKVHVRLHTGVKPYACSICSKNFNRNRDLVRHLRKHATEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00903465;
- 90% Identity
- iTF_00903465;
- 80% Identity
- iTF_00903465;