Lhae013911.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020611.1:223681279-223682665[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.68 2.4e+03 0.6 0.1 15 25 105 115 101 116 0.88 2 10 0.19 6.5e+02 2.4 0.5 15 29 133 147 122 156 0.72 3 10 4.6e-05 0.16 13.9 0.5 10 40 169 196 164 199 0.88 4 10 2.4 8.5e+03 -1.2 3.5 5 36 193 224 189 226 0.67 5 10 4.4e-05 0.15 14.0 2.1 5 40 221 252 219 254 0.93 6 10 0.031 1.1e+02 4.8 5.9 12 39 255 279 251 308 0.88 7 10 0.027 97 5.0 0.6 15 38 330 354 325 358 0.73 8 10 0.00076 2.7 10.0 0.2 11 38 355 378 346 383 0.79 9 10 0.00056 2 10.4 1.3 18 40 389 408 378 410 0.87 10 10 0.013 45 6.1 0.7 19 41 418 437 414 439 0.83
Sequence Information
- Coding Sequence
- atgcCACAAAACATCATGGTTTTAAGTTCAGTTAAGATTGATTATCAAGACGGACTTTCACAATTAATATGTAACAACTGCATAGATGAACTGAATGTAGCTATTAATTTTAAGAACAAATGTGAAgaatcatatttaaaactttgtgATTATTATCGTAATGAAACTGGAAGCCCGATTCAAGATACAAATGATACGTTTGAATATTATACAGATGAAGTAAAGGAATTGagtaatatacattctaaaacagAGAATTCATATAGAATTATTTCTCGAGAACATATAATTGAAGGACGTACAGAATTAATAAATGTGATAGAATGCTTAACGTGTTCGAAGCaggaaataaatttagaaaaatttcagGAACATAAATGTGATTTAAATGTACAATATGTGTATACTTGTAACGtttgtttgaaaaatatacCTGCAGAAGAATATGATAATCATTTAAAAAGACACAAAGATAAAGATCGTGAAAAAACTGATGTAAGCAATTTGGAAACGAAGAAAAAAGTTCTGCAGTGTGAATTTTGTGGTAAAATTACTCAGTATCGTTCAGAATTGGTTCGTCATATGCGTATACACAGTGGAGATCgcccatttaaatgtgaaatttgttttaaaacttttcgATGTAAAGCATTtctaacaaaacattttttaacacATTCCGGTGAGAAAATACACCAATGCTTATACTGTCCGAAAAGCTTTGTGATTAAAAGTAACTTAACGCAACACATGCGTTTACATACTAATGAAAAGAAGTACAACTGTAGTATTTgcggtaaaaaatttaaagcagCACGCACACTTagaaatcatattaaaattcaCACTGGAGAACGTAATTACCCTTGTGAGATCTGTGATAAAGCTTTTGTAAACGAGTTTGATCTACGACGACATGTGAAATTGCATGATAAATATAAAGCAATCTCTGAAGGAACGTACGATAAATCAAATGAACCACCAAAACAACTGCACCAATGTGAGCATTGTGGTAAATTTGTGCCATCTCGTGGAGATTTAACAAAACATCTTCGTGTTCATACGAaagagagaccatttaaatgtgatattTGTGGAAAAGCATTTTCTGGAACAAGTGGATTAGCGGTTCATAGTAGGATTCATACGGGGGCTAAACCGTATGTTTGTAATCATTGTGGGGCTTCGTTTACGCAGTCATCAAACTTAAAGGTGCATGTTAGATTACACACAGGTGTTAAACCATACGCTTGTTCTATatgtagtaaaaattttaataggaaTAGAGATTTGGTTAGACATTTAAGGAAACATGCAACAGAGAaagtataa
- Protein Sequence
- MPQNIMVLSSVKIDYQDGLSQLICNNCIDELNVAINFKNKCEESYLKLCDYYRNETGSPIQDTNDTFEYYTDEVKELSNIHSKTENSYRIISREHIIEGRTELINVIECLTCSKQEINLEKFQEHKCDLNVQYVYTCNVCLKNIPAEEYDNHLKRHKDKDREKTDVSNLETKKKVLQCEFCGKITQYRSELVRHMRIHSGDRPFKCEICFKTFRCKAFLTKHFLTHSGEKIHQCLYCPKSFVIKSNLTQHMRLHTNEKKYNCSICGKKFKAARTLRNHIKIHTGERNYPCEICDKAFVNEFDLRRHVKLHDKYKAISEGTYDKSNEPPKQLHQCEHCGKFVPSRGDLTKHLRVHTKERPFKCDICGKAFSGTSGLAVHSRIHTGAKPYVCNHCGASFTQSSNLKVHVRLHTGVKPYACSICSKNFNRNRDLVRHLRKHATEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00903521;
- 90% Identity
- iTF_00903521;
- 80% Identity
- iTF_00903521;