Lhae029574.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- SMARCC2
- Assembly
- GCA_963971575.1
- Location
- OZ020614.1:59895876-59899901[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9 2e+04 -2.3 0.1 2 9 167 174 159 176 0.61 2 2 5.8e-13 1.9e-09 39.3 0.1 3 42 596 635 594 639 0.93
Sequence Information
- Coding Sequence
- ATGATTGCGTTTGGACCGAAAAAGGACGGTTCTCCTAACGCAAAATACTTCGAATCGCCGGAAactgtacaactctttgatggCATTAGGCAATGGCTagtcaaaaattgtaaaaagtatGTTCAGGCAGATCCACCTACAAATAAAAGCCTGGCAACTCTTGTTGTTCAGCTTTTACAATTTCAGGAAGATAATCTTAGTAAAAATGTAGCAAAACCTGCTATAACAAGAATTCCGGTAAGATGTTTTATGGATTTCAAAGTAAATGGTGGATTATGCCATATTCTGGCTACTGCTTACCGTTATAAATCAGAACAAGGATGGCGACGGTTTGATTTACAAAGTCCATCTCGTTTAGACAGGAACCAAGAGATGTATCTAGCAATTGAGCGAGCTTTAGTACAAAACAAGTGCTATGTATTACCTATTGTTTATGCAAGACCAGATGTTGAAAAGTCCATGGTAACGAAGGCAAAAGATGTTGTTAAACGTCATCAAGGAACCTGGACAGAAGTAGAAAGTGAAGCTACTCATATTTTGTATCCAGCATGTGATCCATTAGAAGAAGAATATGCCCGTCCAACGATGAGAAGAGAGAAAAATATCATGTTTCATTGGTATTATTTCCCTGATTCATATGATACATGGGTACAAACAGATATGAATCTTCCTGAAGTACCCGAAACACCAGTTATTCATTCTGCTCCATGGAGAGTTAACATTACGTGGCTTCTTGATACCGATCAGTACAATGAGTGGATGACTGAAGAAGATTATGAAGTGGATGAGGCTGGTAATAAAaagGTCCATAAATTACGAATGTCGGTTGAAGATTTGATGAACCCAGTGGGTGATGGTGATCGTagtaaaaagaaacaaaaacggAAGCGTTCACCATCACCACCATTAAAACAAGGTAAGAGAAAAAGTGGACGAAGTCCGGCTGTCGGTAATAAGAAACATCGTTTCGGTGAGGAAGTTGAAACTGAAGATCTTACTAAAGATTTGGAAGAACCTGTACCAGAACCAAATATTGTTGAGGTTCCAGTACCTAAACCGTGCCCGACAACCGTTAATAGTAAAAAAGATCATGAATTACAACCATTGAAGGGGGGATCTGTTGCTGACTTAGATGAACCAGAAGACAAAGGAGAAGATTCTCAAACAGGCAAGACAAGTGAATCAAACACTCAGGAATTTGTTGCCAAGAACGATGATCAGGAAGATAATGTTACCGAACAAACGCATCATATTGTTGTTCCTTCTTACTCTGCTTGGTTTGATTATAATTCTATACATGTTATTGAGAAGCGTGCTCTACCAGAATTCTTTAACGGCAAGAATAAATCTAAGACTCCAGAAATTTATGTTGCTTACAGAAATTTCATGATTGATACATATCGGTTAAATCCCACTGAATACATCACAAGTACAGCTTGTAGAAGAAATTTAGCGGGTGACGTTTGCGCTATAATGCGTGTACATGCCTTTTTAGAACAATGGGGACTTATTAACTATCAAGTTGATACTGAATCTCGACCCACAGCCATGGGTCCACCGCCTACTTCACATTTCCATGTACTTTCTGATACACCTTCAGGTTTACAACCCGTTAATCCACCAAAAACACCTCAGCCTTCGGCCGCCAAAACCTTATTAGATCTTGACAAAAACGAAGCTAAAAAACCAGAAGGAGAATTGCCAATGCAGTTTGGCTTAAAACTTGATCAATATGTTCGAAAACCGGCAGCAATGAGAAATAAAACAGCGGCTTCCATGACTCGTGACTGGACAGAGCAAGAAACATTACTACTCTTAGAAGGTCTTGAATTGTATAAAGATGACTGGAATAAAGTGTGTGAACACGTTGGTACCAGGACGCAAGACGAATGTATTCTTAATTTCTTGAGGCTACCTATTGAAGATCCGTATTTAGAAGATCATGAAGCAGGTGGAGTTCTAGGTCCACTGGCTTATCAACCTATACCTTTCAGTAAATCGGGTAATCCAATTATGTCCACTGTCGCCTTCTTGGCATCTATCGTTGATCCCAGAGTAGCAGCTGCAGCAGCTAAGTCAGCTATGGAAGAATTTGCTAACATAAAAGATGAAGTCCCAGCTGCACTTTTAGATGCTCACTTGAAGAATGTAGAAGCATCAACATCTGACGGCAAATACGATCCTGCCGCAGGTTTAGCACAAACTGGTATTGCAGGTACGTTACCGGAAAAAGAAGAGGAAGAGAAGCTTAAGAAGGACAGTGAAATAAAAGATGAAGAAATCGAGAAGCCAGCTAGTGAAATTGCCGATCAGAAGAAGAACGGTATAGAGAGGACTGAACCAATGGAAATAGATAAATTAGATGACAAAGTGAAATTAGACACGAACGCTATCAAAGAAGAACCAAGACCCGAAGGCAGTGAAGCAACTAcCTCTAAAGATGGAACAGAAGAAAACAGTGAAGAAACTCTTCCGGCCAAAACAGTTAAAGATGCTCAAATGCAGATGGCAGCGGCCGCTGCTTTAGCCGCGGCTGCAGTAAAAGCCAAGCATCTTGCGGCAGTAGAAGAACGCAAGATAAAATCATTAGTAGCTCTATTAGTCGAGACACAAATGAAGAAACTTGAAATAAAACTTCGTCATTTTGAAGAATTGGAAACAACCATGGAAAGAGAACGGGAGGGATTAGAATATCAACGGCAACAACTGATTACAGAAAGACAACAGTTCCATTTGGAACAATTGAAGGCTGCTGAGTTTAGAGCAAGACAACAAGCCCATCAGAGGTTGCAAGCAGAACAAGGTAATCAACAACAAGCTACATGGCAGCACAACGCAATGGGAGGAGCTGGCTTCGTTGCAGGTACTTCAGTTGCTGTTTCatctgaataa
- Protein Sequence
- MIAFGPKKDGSPNAKYFESPETVQLFDGIRQWLVKNCKKYVQADPPTNKSLATLVVQLLQFQEDNLSKNVAKPAITRIPVRCFMDFKVNGGLCHILATAYRYKSEQGWRRFDLQSPSRLDRNQEMYLAIERALVQNKCYVLPIVYARPDVEKSMVTKAKDVVKRHQGTWTEVESEATHILYPACDPLEEEYARPTMRREKNIMFHWYYFPDSYDTWVQTDMNLPEVPETPVIHSAPWRVNITWLLDTDQYNEWMTEEDYEVDEAGNKKVHKLRMSVEDLMNPVGDGDRSKKKQKRKRSPSPPLKQGKRKSGRSPAVGNKKHRFGEEVETEDLTKDLEEPVPEPNIVEVPVPKPCPTTVNSKKDHELQPLKGGSVADLDEPEDKGEDSQTGKTSESNTQEFVAKNDDQEDNVTEQTHHIVVPSYSAWFDYNSIHVIEKRALPEFFNGKNKSKTPEIYVAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDTESRPTAMGPPPTSHFHVLSDTPSGLQPVNPPKTPQPSAAKTLLDLDKNEAKKPEGELPMQFGLKLDQYVRKPAAMRNKTAASMTRDWTEQETLLLLEGLELYKDDWNKVCEHVGTRTQDECILNFLRLPIEDPYLEDHEAGGVLGPLAYQPIPFSKSGNPIMSTVAFLASIVDPRVAAAAAKSAMEEFANIKDEVPAALLDAHLKNVEASTSDGKYDPAAGLAQTGIAGTLPEKEEEEKLKKDSEIKDEEIEKPASEIADQKKNGIERTEPMEIDKLDDKVKLDTNAIKEEPRPEGSEATTSKDGTEENSEETLPAKTVKDAQMQMAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLQAEQGNQQQATWQHNAMGGAGFVAGTSVAVSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768182;
- 90% Identity
- -
- 80% Identity
- -