Lhae050152.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- retn
- Assembly
- GCA_963971575.1
- Location
- OZ020621.1:8886267-8913544[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-20 2.1e-16 62.0 0.0 16 89 44 115 36 115 0.91 2 2 3.9 2.8e+04 -2.5 0.0 29 38 257 266 235 283 0.69
Sequence Information
- Coding Sequence
- ATGAGACGCGTCACCGCTCGTCTCGTTCCAACTGAGCTGATTTTTCTACAAAAACAGTACCGTAAACAAGTCTCTTTAGACATGCTGGATCGCGTCAATTTTGATCCCACATTCATGGAACGCATCATAACAGGCACTCCAATCAACAGATTACCCATAATGGCTAAGTCAGTACTGGACCTTTATGAGTTATACAACCTGGTAATAGCGCGAGGTGGGCTCGTAGACGTCATCAATAAGAAGTTATGGCAGGAAATCATCAAAGGGTTACATCTTCCATCTTCTATAACCTCGGCCGCTTTTACATTACGTACACAatatatgaaatatttataccCATACGAATGCGACAAAAGAAGATTAAGTACCCCAGCAGAGTTACAGGCCGCTATCGACGGTAACAGACGAGAAGGACGTCGCAGTAGTTACGGTACATATTCAGAGATGGTGCAGCGCAGTCCCATTCCTTCATCACAGATGTCACCACTGTCGCTAGTTACACAGCAACAGAATATGGTCGCAAGGGCAGGCCTCGGCGCCAGCATGGGTTTACATAATGGTGCTCATCATCCCAGTCATCCACAACCTTTAGGACAGTTACCCTCAGcCGGTCCAGTTCCTGGTTTAGCCCCATCAGAATTCGAAGCCCGTATGGTTGAATACGTAAAATTACTTAACAAAGAACTCCGTAGTTCAGCAGCAACCCCACCACGACAAGGTTCATCATCACCACCCAGTGCTACCTCTCCATTAAATCCTTTGGAGATGTCACGACTAACCCTTTGGAATCTCTACAATAATAATCCAACTCCACCATGTCCGGAACCACAGAAGGAACCCATTAATTTATCAGAAAACAATTCACATCCGATGACACCGTCCATCAAGAGAGAACAAGAAAGGGATCCACCACCACCAGCGAAGAGACTTCACCATGATGATGAGGGCAGTCCAACCACtcctcctaacagtactcacatcaaaatcaatagcaGAGgggACGCTCGTAATGGAGACAACTCATTAGTTGTTAGTATGGAACTGAACGGTGTTATGTACCAAGGTGTATTGTTCGCACAGTCCTCGCCAGGGGCGCGTAGTACAAGACTCGCTTCCTGA
- Protein Sequence
- MRRVTARLVPTELIFLQKQYRKQVSLDMLDRVNFDPTFMERIITGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPIPSSQMSPLSLVTQQQNMVARAGLGASMGLHNGAHHPSHPQPLGQLPSAGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPSATSPLNPLEMSRLTLWNLYNNNPTPPCPEPQKEPINLSENNSHPMTPSIKREQERDPPPPAKRLHHDDEGSPTTPPNSTHIKINSRGDARNGDNSLVVSMELNGVMYQGVLFAQSSPGARSTRLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872844;
- 90% Identity
- -
- 80% Identity
- -