Lnew019721.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- zfy1
- Assembly
- GCA_030264535.1
- Location
- JARJEB010031511.1:1596-3290[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.5e-06 0.08 13.4 0.1 21 45 211 235 205 242 0.89 2 5 0.041 9.5e+02 0.4 0.1 22 47 240 265 236 268 0.85 3 5 0.053 1.2e+03 0.0 0.2 26 45 275 294 272 299 0.82 4 5 5e-06 0.12 12.9 0.0 21 45 324 348 311 354 0.90 5 5 0.0096 2.2e+02 2.4 0.3 23 45 382 404 375 408 0.88
Sequence Information
- Coding Sequence
- ATGGACGTGAATCAAGTTATTATACTGAATCCAAGTGATAAACAGTTAAAGCCACCGGCCTTTGAAGATTTTACCAAAATTTGTCGTGTCTGTCTGCATTACATCACTGAGACCGAAGCTTGCAAAAATGTTTACGATGAAGAATGCAAGATGAGAATAAAAACCCTATTGGAAATATATGCTTACACAAAGATTCCTGAAAGAGAAGATTCGTTACCGCAAAATGTCTGTTCCGATTGCACAACCTTCTTGATCGAAATCCACACATTTCGAAGCCGCTGCAAAGTAAACGAAGATTTACtcatcaaaatacaaaaacgagCCGAAGAAGGCGACGCAATTCAAGTCCAGCACAATTACGTTGGCTATGCGAATCTTGTTCATTCAAAATCAGCAACAGATACCAGTGATTTCGATAATGCAGAAGAAGCGCAAATCATCGCACAGATAAACGATGAACGAATGGGTATGTTTAGATGTAAGGATTGTCATTTGGTGTTCAGTGATAGGAAGAAACTGTTTGATCATCGAACGCTAGCCAAACATTCACGACGACCAGGTAGTGCTTGTCCATATTGCGGTAAGATGTTCAATACGACGGCGTTAGTTCAACATATTCGGACGCATACCAAGGAGAAGCCGTTCATCTGTGAATTGTGTTTCGCTGCGTTTTCGATTAAGAATAATTTGCGAAGACATATGAAGACACACAGTGCAGAACGTTCGCACATTTGTGAAACGTGCGGGAAAAGCTTATCGCGATCAGAGACTTTAAAGCAACACATGAAACTCCACGATAGGATGGATATTGTAATTGCAAAGGTGTGTCCAGTATGTGCGAAACTTTGTGCCAGTGACCAAAAACTGAAGGTACACATGCGGTATCACAAATACAAGTTTTTGTGTACTGACTGCGGGAAAGTGTTTGCGACGAAAGCGAatttaaatacacatattCGCgtgcatacgGGTGAAAAACCCTTTACATGTCCAGTATGTGGCCGTGGTTTCTCCCAGTCATCGTCCCTTCGCACTCACACGGCGATACATAATGGAGAGAAATTACACAAATGTGGGGATTGCGATCGTAGTTTCGCTGTGCGTGGAAATTTAATGGTGCATCGACGCATCCACACTGGGCGAACACCACACAAGTGTTCGATTTGCAGCAAGGGCTTTTGCACCGCCACCAATCTAAAGAAACACATTCACACGCATAGCGTTAACATGCAAAAATTTCCAATGATCAAAAACGATATTAAAGAAGAACACGAGCAAATCGAAGAAAGTGCGGAAGAAATTGAAGAGGAAGAAACCGATGATATTGATGAATGCGAGGAACGGCGACAGGATGAGGAAATGTTGAATGAAGAATTTGATCTTGAGCACGTAACGGGAGAGGAGATTGTTATTGGAGAGTATCAGCAAGAAGACAACACCGAACTGTATTACGAAGAAGTTTATGATGGCGATCCGGATGTTGTTGGTATCAGTGCACAAGAGGTCATCATTATGGATGGGGATTGTATGAAAGTGCAAAAGATTCAGCAAGAATAG
- Protein Sequence
- MDVNQVIILNPSDKQLKPPAFEDFTKICRVCLHYITETEACKNVYDEECKMRIKTLLEIYAYTKIPEREDSLPQNVCSDCTTFLIEIHTFRSRCKVNEDLLIKIQKRAEEGDAIQVQHNYVGYANLVHSKSATDTSDFDNAEEAQIIAQINDERMGMFRCKDCHLVFSDRKKLFDHRTLAKHSRRPGSACPYCGKMFNTTALVQHIRTHTKEKPFICELCFAAFSIKNNLRRHMKTHSAERSHICETCGKSLSRSETLKQHMKLHDRMDIVIAKVCPVCAKLCASDQKLKVHMRYHKYKFLCTDCGKVFATKANLNTHIRVHTGEKPFTCPVCGRGFSQSSSLRTHTAIHNGEKLHKCGDCDRSFAVRGNLMVHRRIHTGRTPHKCSICSKGFCTATNLKKHIHTHSVNMQKFPMIKNDIKEEHEQIEESAEEIEEEETDDIDECEERRQDEEMLNEEFDLEHVTGEEIVIGEYQQEDNTELYYEEVYDGDPDVVGISAQEVIIMDGDCMKVQKIQQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00902437;
- 90% Identity
- iTF_00902437;
- 80% Identity
- iTF_00902437;