Lnew004551.1
Basic Information
- Insect
- Liometoxenus newtonarum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030264535.1
- Location
- JARJEB010007299.1:8947-11218[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-107 1.1e-102 343.8 31.5 1 300 159 447 159 447 0.94 2 2 0.0068 1.6e+02 1.8 3.5 120 169 445 494 444 507 0.83
Sequence Information
- Coding Sequence
- ATGGAGAAGGAGGTAGAATCGCATTCTAAAGCTAATCAGTCGATAAGCAAACCGGAAAGTTACTTTTCTGATTCGGATACATTTGACTGTTCACGTATCGCTGCTAGTCAACAGTCAGTTGATGGGGTTGAAAGAGAAACAATTAGAATGGGTCAAACGAAAACGAAGCTTGTCCAAGTTGCACTCGGTGAAAATGAAATCTATGCACCTTGCAATCGAGATCAcgtcgacgacgacgacgacgacgacgttCTTGTTGGTAGCGTTCGCACCGAAAGTGATTTGGCAAACGGCCAACCAACAAATGTTATTTCGGACACGACGGATACGATGTTGGAATCCGATTTCGATTCGCGGTTAACCGACACAACTAACAGTGATAACGAGACGACTTACAGTACGCAGTCGTTGATAATAAaggattttgattttgatacaAGCGTtgaacaatattttcaaagtgaaaaagatgaaGCCGAGGCCCGGCTGCTTGCAAGACGCGCTGCGAGGGCTGAAGCTAGGGAAATCCGCATGCGAGATTTAGAGCGACAGCAAAAAGAACAGGAAGAGAACGCTGACAGACAATTCGACATGTTGAGCGAACCACTTACACGCCGTCCGGCCACGTCGTCGAGGTATCTTTCGAGTCGAAGATCTTCGGAGGACTCGTTGGAGGATACTGGCAGTTTACGCGATCTTAGACATGAGCTCAAAGAAGTTGAAGAGAAATTCCGGAAGGCAATGATTGCCAATGCCCAGTTAGATAATGACAAAGCGGCACAGTCTTACCAATTAGAACTGTTAAAAGACAGATTAGAAGAGTTGGAAGAAGACCATTCGCAAATAAAACGAGAACACAAAGACAAGTGCAGGGATTTCGAGCAATTAAAACGGGTAACGGCACAACTGAAGGAAGAGCTGGTCATATTTAAAGCGGAGCTTGAAGAACGAGAGCGTTTGATAGCCGAAAAGGGTTTAGTCATTGTTGGAACGGAGGAGACGAGCATGGATGAACCGGAGGGTGTTAGTAATGGACCAATTAAGATTAAGCGAGCACTCGTTAGCACTGAGAATGCTCATCTGTTGGAAAACTCTGGGGAAGGTAGTTTAGACGTACGACTGGCGCGCTTTGCCAAGGAGCGCGGCGAACTGTTAGATCAAATTAGTCACTTCAAGTTAGAATtagaagaagagaaaaataagCGACGGAGAAATGGTAGTGGGGCGACGCTTAACGGGCCGGATTCGGATTATGATGCTGCTGATATGCAAAGAGAAGCAAGCAAGCAATTGGCTGAATTCAAATTCAGAGCGCAGAAAGCGGAACAGGACGTTGCAACGTTGCAAGCGACAGTTGCAAGACTCGAAAGTCAGGTGATTCGTTATAAATCGGCGTCCGAAATTTCGGAAAAGTCTGAAGAAGCGCTCAAAGCAGAAAAGAGGAAATTACAAAGAGAGgCACGGGATGCTCAGAGTAGAGCAGAAGAACTAGAAGTATCAAATACACATTTAATTAAACGATTGGACAAGCTCAAAAACGCAAAGTCAGCGCTACTAAAAGAACTTTGA
- Protein Sequence
- MEKEVESHSKANQSISKPESYFSDSDTFDCSRIAASQQSVDGVERETIRMGQTKTKLVQVALGENEIYAPCNRDHVDDDDDDDVLVGSVRTESDLANGQPTNVISDTTDTMLESDFDSRLTDTTNSDNETTYSTQSLIIKDFDFDTSVEQYFQSEKDEAEARLLARRAARAEAREIRMRDLERQQKEQEENADRQFDMLSEPLTRRPATSSRYLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQSYQLELLKDRLEELEEDHSQIKREHKDKCRDFEQLKRVTAQLKEELVIFKAELEERERLIAEKGLVIVGTEETSMDEPEGVSNGPIKIKRALVSTENAHLLENSGEGSLDVRLARFAKERGELLDQISHFKLELEEEKNKRRRNGSGATLNGPDSDYDAADMQREASKQLAEFKFRAQKAEQDVATLQATVARLESQVIRYKSASEISEKSEEALKAEKRKLQREARDAQSRAEELEVSNTHLIKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -