Basic Information

Insect: Liodrosophila aerea
Gene Symbol: -
Assembly: GCA_035045005.1
Location: JAWNNL010001129.1:59479-67676[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0018 18.8 2.1 1 23 258 280 258 280 0.97

2 18 8e-06 0.00059 20.3 0.4 1 23 286 308 286 308 0.97

3 18 0.0012 0.087 13.4 0.9 1 23 314 336 314 336 0.95

4 18 1.7e-05 0.0012 19.2 3.1 1 23 342 364 342 364 0.97

5 18 3.9e-05 0.0028 18.1 4.7 1 23 370 392 370 392 0.99

6 18 7e-05 0.0052 17.3 5.7 1 23 398 420 398 420 0.97

7 18 3.5e-07 2.5e-05 24.6 4.3 1 23 426 448 426 448 0.98

8 18 1.2e-07 9.1e-06 26.0 2.4 1 23 454 476 454 476 0.97

9 18 7.2e-05 0.0053 17.3 6.7 1 23 483 505 483 505 0.97

10 18 0.00013 0.0092 16.5 6.5 1 23 511 533 511 533 0.98

11 18 1.1e-05 0.00082 19.8 4.5 1 23 539 561 539 561 0.98

12 18 8.1e-06 0.0006 20.3 8.1 1 23 567 589 567 589 0.98

13 18 6.6e-06 0.00049 20.5 7.6 1 23 595 617 595 617 0.97

14 18 7.4e-07 5.4e-05 23.5 7.7 1 23 623 645 623 645 0.98

15 18 0.00023 0.017 15.7 9.5 1 23 651 674 651 674 0.95

16 18 8.2e-05 0.006 17.1 0.9 1 23 680 702 680 702 0.98

17 18 0.0009 0.066 13.8 3.4 1 23 712 734 712 734 0.97

18 18 1e-05 0.00075 19.9 1.6 1 23 740 763 740 763 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0018	18.8	2.1	1	23	258	280	258	280	0.97
2	18	8e-06	0.00059	20.3	0.4	1	23	286	308	286	308	0.97
3	18	0.0012	0.087	13.4	0.9	1	23	314	336	314	336	0.95
4	18	1.7e-05	0.0012	19.2	3.1	1	23	342	364	342	364	0.97
5	18	3.9e-05	0.0028	18.1	4.7	1	23	370	392	370	392	0.99
6	18	7e-05	0.0052	17.3	5.7	1	23	398	420	398	420	0.97
7	18	3.5e-07	2.5e-05	24.6	4.3	1	23	426	448	426	448	0.98
8	18	1.2e-07	9.1e-06	26.0	2.4	1	23	454	476	454	476	0.97
9	18	7.2e-05	0.0053	17.3	6.7	1	23	483	505	483	505	0.97
10	18	0.00013	0.0092	16.5	6.5	1	23	511	533	511	533	0.98
11	18	1.1e-05	0.00082	19.8	4.5	1	23	539	561	539	561	0.98
12	18	8.1e-06	0.0006	20.3	8.1	1	23	567	589	567	589	0.98
13	18	6.6e-06	0.00049	20.5	7.6	1	23	595	617	595	617	0.97
14	18	7.4e-07	5.4e-05	23.5	7.7	1	23	623	645	623	645	0.98
15	18	0.00023	0.017	15.7	9.5	1	23	651	674	651	674	0.95
16	18	8.2e-05	0.006	17.1	0.9	1	23	680	702	680	702	0.98
17	18	0.0009	0.066	13.8	3.4	1	23	712	734	712	734	0.97
18	18	1e-05	0.00075	19.9	1.6	1	23	740	763	740	763	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTATCTGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCACGTTAGGCGGACCTCCGCCATTGCCCGGCAGCAAGGGAGGTGAACATAATAAGGAGGACGGAAGCGGCGGCAAGCCGCCACACGGCATCGAAATGTATAAAGTGAACATTGAGGATATATCGCAATTATTTACGTATCACGAGGTCTTTGGTAAAATCCATGGCGATGTGGTGAATCATGTGGCGGCGGTGCATGGCAGCCAGCTGCCCCCGCCGCAGCTGCCACCACCCCCGCCACTGCCACCGCAGACGACGCATTCGGCTagcgcagctgcagcagcagcggcggcgtcCACAAATAATGCAGCCGTCGCTGCTGTAATGGCCTCGGCCAATGCAGCAGCCGCGGCTGCAGCGGCCGCATCGGCAGCCgtcacacagcaacagcagcaacaacagcagcagcagcagcaacagcagcagcagcagcaacaacagcagcaacagcaagcgcCAGTGACAAGCACAAATGCTGGAACACAGCAGGGCAGCGCCACGGTGACAACGACTAGCTCaggtagcaacaacaacaataataacggGGGTAATGGGgggaataacaataacaattcgaCAACGTCGACGACGGGTGAACTGCTGATGCCCAAAATGGAGGGCGGCATTCACGGCGTCGATGGTCAGTCGAGCGTATCGTTGGCGCCGGATGGCACGCCCATTGCGACGGGTACGCATGTTTGCGATATTTGTGGCAAGATGTTCCAATTTCGCTATCAGCTGATTGTGCACCGTCGCTACCACAGTGAGCGTAAGCCGTTTATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAGATCCATATTGGCGGTCCCATGTTCACCTGCATTGTATGCTTCAATGTGTTTGCGAATAACACCAGTCTGGAGCGTCATATGAAACGCCATTCAACGGATAAGCCATTCGCCTGCACCATTTGCCAAAAGACATTTGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCCCATACGGGCGAGACACCGTTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTGTGCGGCAAGAAATACACCCGCAAGGAGCATCTAGCCAACCATATGCGCTCCCACACAAACGAGACGCCGTTCCGCTGCGAAATCTGTGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGCTGAATCACGTGAGGCAGCACACGGGAGAGTCGCCCCACCGCTGCAGCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTGAATCATATACGGCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACGTACTGCACAAAGACCTTCACCCGGAAGGAGCACCTGACGAATCATGTGCGCCAGCACACGGGCGATTCGCCGCATCGTTGCAGCTACTGCAAGAAGACCTTCACCCGGAAGGAGCACCTGACGAACCATGTCCGTTTGCACACTGGAGATTCGCCGCACAAGTGCGAGTACTGCCAGAAGACCTTCACCCGAAAGGAGCATCTCAATAACCATATGCGTCAGCACTCCAGCGACAATCCCCATTGCTGCAACGTGTGCAACAAGCCCTTCACCCGCAAGGAGCATCTCATCAATCACATGTCACGCTGTCACACCGGTGATCGACCCTTCACCTGCGAGACCTGCGGCAAATCCTTTCCCCTCAAGGGCAATCTACTATTCCATCAGCGCAGCCACACCAAGGGTCAGGAGTGTGAGCGTCCATTTGCCTGCGAGAAATGCCCCAAGAATTTCATCTGCAAAGGTCACTTGGTGTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACGCTGTGCAGCAAGGCTTTCGTTGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCTgtgcatccgcatccgcaaaTACCAGCCGGTGTGCTGACCCAGGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCATCACTCGACGACCACGATGCACACCATACAGCAGATAACAGCtggcgctgcagcagctggcgcCGGTGCCGTCCAGCTGACGCCCGGCCTGGTGCCGCTGGTGACCAGTACGCTGATCTCGCATAACGCTCAGCAAtcgcagaagcagcagcaggcagcggcagcagttgctgcGCAACAGCAGGCTGCGGCCGCAGcagcggcacagcagcaagcggcagcagcagcggcagctcagcagcaggcggcggcagcagcacatcagcagcatcagcaacaggttgcggcacagcaacaacagcagcaacaacaggcagcagtggccgcacatcagcagcagcaacagcagctgcagcagcagcaactgttgcagttgtccATACAGCAGGCagcgcatcatcatcagcaacatcagcagcaacagcagcagcaacagcaccatcaacagcagcaacaacaggcgcATCAACAGGcgccgccacagcagcaacaacagcaacagccgccaCCTCAGGTGCCCATTGCTCTGATCAGTGATCCCAGTGCGTTGGCCCGGGCAGCCATGCAGTTGCAACATCTGCCCACCAATGTTGAACAGCATCCGGTGGTTTACTAA
Protein Sequence: MQHVSAASSAPSVVSAPVVTTGGGTTITLGGPPPLPGSKGGEHNKEDGSGGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTHSASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAVTQQQQQQQQQQQQQQQQQQQQQQQQAPVTSTNAGTQQGSATVTTTSSGSNNNNNNGGNGGNNNNNSTTSTTGELLMPKMEGGIHGVDGQSSVSLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSTTTMHTIQQITAGAAAAGAGAVQLTPGLVPLVTSTLISHNAQQSQKQQQAAAAVAAQQQAAAAAAAQQQAAAAAAAQQQAAAAAHQQHQQQVAAQQQQQQQQAAVAAHQQQQQQLQQQQLLQLSIQQAAHHHQQHQQQQQQQQHHQQQQQQAHQQAPPQQQQQQQPPPQVPIALISDPSALARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00560429;
90% Identity: iTF_00560429;
80% Identity: -