Laer012405.1
Basic Information
- Insect
- Liodrosophila aerea
- Gene Symbol
- -
- Assembly
- GCA_035045005.1
- Location
- JAWNNL010001041.1:53266-59223[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.5e-12 2.1e-08 33.9 0.0 1 40 598 638 598 641 0.90 2 4 5.2e-14 1.1e-10 41.1 0.1 2 39 653 690 652 693 0.94 3 4 1.2e-17 2.7e-14 52.7 0.0 1 45 707 752 707 752 0.98 4 4 1e-19 2.2e-16 59.4 0.0 1 43 759 802 759 804 0.96
Sequence Information
- Coding Sequence
- ATGCCATTGTGCAGAAACTTAGTCAAAAATGAGGCGggTCTACTGCGAACGGCGGAACAGCTAAAAATCAAAGGACTGTGCGAGCCCGCTGAGAATGCGGATGATTTGAATGACGCTGCATCGGCGACGATAACCGTATCGGAGAACATACAACAGGCGGTTGTTGGCAGTATTGTGAACGCGAGCCTAGTGCCTGGCGCACCCTCGCCCACaatcgagcagcagcaacagcagcaggcgcatcatcagcaacagcagcaacaggagcaacagcaactggtGAATAGTACATTGCTGTCGCAGCATAGTATTGCAACGAATAGTGGCATACAATTGGCCACTGCGGCTGGGGGTCAACAGTTGTTGAGCAAcacaagtggcagcagcaacagcagcagtttgcaacagttgcaacaacagcaacagcagcagcagcaacaacagcagcaacagttgcagccaaCGCCGCGTAAGTCGCGACTGCGTAAACGCTCCAAGTCGCCAGacgtgcaacagcagcaatcacaaacagcagcacatcaccagcaacagcagcagcaacaacagcagcagcagcaacaacatcatcatcatcatccgcaAACGATACTCATTCAGGGACAAAATCAAACATCTATCGTGAGTCTACAGCAAACGGCCGACGGCAATTATATACCGGTTGCAACCTCTGCCGACGATAGCGATAGCGATAACAAGCCGCAAAAGATCTGCAAAACAGAACAATCGGTGGCATCGCCAGCATCCAATTCATCCACATCGAATAATGCCGCTGCGGCTGGCGTGAGCGGTCAGGCGATTGTGACACAAATTGTAGTAGCGCGCGACGGAAaagataacaataaaatgacTAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGAGTGCCCATGGGTTTTCTGGACTTTACACCGGAGCCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACACGTCGATCTATCGTGCAACCCCAGCACCGATACACGCGATCTATCAAATCCCACCGAACCGCTCGACATAGACAATCATTTGGCACAGCAAATCCATCGGCTCGATCAATCTCCCATGCATTCAATACATCATCACACCACCGGGGACGAGAGTAACTCGAATCTGGTGCAGCACATCAAAAGCGAAGTGATTGAGGCCAAACACTTGGCCCACGTGcaggcgcaacaacaacagcaacagcagcaacaacagcagcagcagcaacaacaacaacagcagcagcagcaacatgcacatcatcatcaacagcatttgcatgcacagcaactgttggcgcagagtcagcagcagcagcatcagcaacaacagcagcaacatcagcagcaacaacagcaacaggcagcagtGCATGCACAGCATGCAGCCGCAGCTgtagcggcagcagcgcaTGCCACGCATGCGGAGATCAGTGGTGCCACTGTTATGGAGATTGATCCAAGCCAAATTAAGCACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAATATGATGTCCACTGGGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAATGGTTCGCCGCACGATCAAAATGAGCCGCATTATACGAATTTGGATCAGCAGCACGGCGGCCTGGGTGGCAGTGTTTGTGGCCCTGGCGccggtggtgttggtggtggcgGCAGTGGCGGCAttggtggtggtagtggtggtCCAGGTAGTGGTGCTGGCGAGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGTACGAAATCTTGGAATGAGGATGCCTTACAAAACGCCTTGGAGGCCCTACGTTCAGGACAAATATCGGCGAATAAAGCGTCCAAAGCATTCGGTATACCCTCATCGACACTCTACAAGATAGCGCGTCGGGAGGGGATACGTTTGGCGGCGCCATTCAATGCGGCACCCACAGCATGGACGCCCGAGGACTTGGAGCGGGCATTGGAGGCGATTCGGGCGGGTAATACATCTGTACAGAAAGCGAGTGCTGAATTCGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATCGAGCTATCACGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTTGGCCAAATGTCCATCAATCAGGCGGCCATACACTATAACCTGCCCTACAGTTCGCTCTACGGAAGGTTTAAGCGGGGCAAATACGATTTGGTGACCAACACCAGTGGCGCCTCGCTGATCAACACATCGGGCAACACCACAGGCAGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCATCGCCACATCCGCCGCAGACACCGCAGCATCACAGTACGCCGCAGCATCACAGTTCGCAGCAGGGACCGCCGACGCCGCAGCACATACAGCAGCATGTGGTGcatatgcaacagcagcagtcgccGCATCAGGCAcaccatcagcaacaacatttgcaacagcagcaacaggatgTGGTCACATCGAGCAGTCAAGTGGTGCatagtcagcagcagcagcagcagcaacaacaacagcagcagcagcttcagcaGATCTATCAGCATCACGGCACGCCCGAGCGAAGTTGA
- Protein Sequence
- MPLCRNLVKNEAGLLRTAEQLKIKGLCEPAENADDLNDAASATITVSENIQQAVVGSIVNASLVPGAPSPTIEQQQQQQAHHQQQQQQEQQQLVNSTLLSQHSIATNSGIQLATAAGGQQLLSNTSGSSNSSSLQQLQQQQQQQQQQQQQQLQPTPRKSRLRKRSKSPDVQQQQSQTAAHHQQQQQQQQQQQQQHHHHHPQTILIQGQNQTSIVSLQQTADGNYIPVATSADDSDSDNKPQKICKTEQSVASPASNSSTSNNAAAAGVSGQAIVTQIVVARDGKDNNKMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIHHHTTGDESNSNLVQHIKSEVIEAKHLAHVQAQQQQQQQQQQQQQQQQQQQQQQHAHHHQQHLHAQQLLAQSQQQQHQQQQQQHQQQQQQQAAVHAQHAAAAVAAAAHATHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSTGHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGSGGIGGGSGGPGSGAGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDLVTNTSGASLINTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPQTPQHHSTPQHHSSQQGPPTPQHIQQHVVHMQQQQSPHQAHHQQQHLQQQQQDVVTSSSQVVHSQQQQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470787;
- 90% Identity
- iTF_00832073;
- 80% Identity
- -