Basic Information

Insect: Linnaemya vulpina
Gene Symbol: ush
Assembly: GCA_963675445.1
Location: OY776276.1:113460378-113465937[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.085 10 8.0 0.0 6 20 241 255 237 257 0.95

2 9 0.00044 0.052 15.2 0.8 1 23 312 334 312 334 0.98

3 9 0.073 8.7 8.2 1.0 2 21 363 382 363 383 0.92

4 9 0.076 9 8.2 2.9 2 21 787 806 786 807 0.93

5 9 0.017 2 10.3 0.0 3 21 848 866 846 867 0.92

6 9 0.18 22 7.0 0.1 1 23 956 978 956 978 0.97

7 9 0.02 2.4 10.0 1.4 1 23 984 1006 984 1006 0.99

8 9 0.0005 0.059 15.1 0.6 1 23 1083 1106 1083 1106 0.96

9 9 0.66 78 5.2 0.7 2 20 1234 1252 1233 1254 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.085	10	8.0	0.0	6	20	241	255	237	257	0.95
2	9	0.00044	0.052	15.2	0.8	1	23	312	334	312	334	0.98
3	9	0.073	8.7	8.2	1.0	2	21	363	382	363	383	0.92
4	9	0.076	9	8.2	2.9	2	21	787	806	786	807	0.93
5	9	0.017	2	10.3	0.0	3	21	848	866	846	867	0.92
6	9	0.18	22	7.0	0.1	1	23	956	978	956	978	0.97
7	9	0.02	2.4	10.0	1.4	1	23	984	1006	984	1006	0.99
8	9	0.0005	0.059	15.1	0.6	1	23	1083	1106	1083	1106	0.96
9	9	0.66	78	5.2	0.7	2	20	1234	1252	1233	1254	0.91

Sequence Information

Coding Sequence: ATGATGGACGAGCACACCGAAGAAGAGAGAAGAACCCCACAAAATAATCATCATTCCTATATGACACATCAAGAGCAAACAAAAGAGACTGATTTGGAAAGGGCGGCAAGTCAAAACGATGAGGACATTGAAATGCCTACTAGTGAAGAACAAGATATGGACATACAACCACCTCTACAAAAAAGGGCCAAAATGGCCTTGGAAGAAGAAAGTAAAGGAAGTAGTCCTGCTGTGCAATCACCTCTTGCAAGAACTACAGAAAACTCAAATGACTCTGTAAAATGTGATAATATGCGAAATCAAAGAGATGAATCCAATTCAAGAGATCATAGATCTACCAGTCCTTATTTAAGGGCCATAACACCAGCTATAAGTCCTTCGaaagaagaacaagaagagAACACAGATGAAAATATTTGCTCTCCCACTTCCGGCTCAATACCTAAATTAAGACTCAATGCTTTATTGGCCTCCGATCCAGCCCTTATGCCAGATGCCAAAGACTTGAAGGTTGTGCATGAAGAATCCCAGACTCAACAAAGAATAGCACGTTTAGAACAGCATCTGCAACAACAATTGCAAACAGAAGACTCAGAATGTATCGACACAGAACGCATGTCAGCTGTGACCAGTGCTGCCGTAGTGGAACCAGTTAAAAAGCCATTATCAGCATCAGTGGAAGCACCACCACCACGTATGAAAGTCTTTATGTGTATACCCTGCGGCATAGGCTTTAGTTCACCCTCTACTTTAGAAGCCCATCAAGCGTATTATTGCTCTCATCGGCATAAAGAAGCCGACGATGATAGTTCATTGTCCGCAGCCATAACTGAGAAAAGCTCAGGCTCTCCTACACAAGCAAATAATTCCACGGCAAATTTATCACTGGCGACCACAGAGACAACATCAAAAGTTGCCAAGACTGGCAAACAATATGCCTGTACACAGTGTTCCTATAGTGCTGACAAGAAGGTTTCGCTTAATCGCCACATGCGTATGCATCAGACATCGCCAGCACCCAGTCCCAATGCTTCCAATAATGGCAGTGTCATAATGGAGGATAATTCTAGTCAACAAGTGGATCGTTACTGTAGCGATTGTGACATACGTTTCAATAACGTTAAAACCTACAGAGCCCATAAGCAGCACTATTGCAGCTCCCGAAGAACAGACGGACAATTAACACCGAAGTTGGAAGTATCAACCACGACGACCACTCCAAAAGTTTCAGCTGCGGTTAGTGGCGCAATAAGCCCACAGACTCGAACTAAAACACCCACACCTGCAATGGTAGCCGCGGCAGCGGCCGCAGCTGCAGCAGCCCTACAACAACCTCCGGCTACTCCCTTCCTGGCGTTGCCAACAAATCCCATATTAATAATACCATATTCGTTGATACGTTCCGCCAGTCTTATAGCAGGACCATTATCATCACCTTCGCCGGCCGTGGTAAATCCCGATACAACCTGTTTCACTTTGGATAATGGCAATTTGAAACCTTTAGCAACGGCTCTGAATATAAGTGCTTTGAATGCAGCGAATAGTCTAGCAGCAGCTGCCGCCCCAACAGCACAGCAGTTAAGCATAGTGGAGTCAACTcgtcaaacaaatttaaatgaaacgcTGCTCACAGAGAAGAATATCAAACGAAATGTGGATGAGTCATCAGAGCACGCAACAAAGAGAAAAGCTGACGGTTTAAGagaaTCGGCACCCTTGGATTTATCACTACGCCGTTCTCCAATTGCTGCTTTATTACAAAGGCAACGTTTCAATTCCTCCTCATCATTTTTAGATACTGAACAGCAGCGTTTAGACATGGAAACTTTATTAGAAGCCGGCAAAGAAAATTTGTCTCTGGATGAAAGTGGCAGTATAACACCTGAACAAATCGTATGTGCTCCCTCTTTACCGAATAGTCCTTCCATGAGTCCCTCGCCCAGACGAAGAGCCATAAGTCCTAGAAGTTCCGGTGCCGGCAGTACATCTTCTATGTCACCACCAGCCACAATACCGCCAAATGCTTTAAGTGCAGCCGCCAATTCCACAAATATATTAGACAACTTACAGTTACGCTCCATGCTGCCTGCAGAGCTATTGAACCCTCTGCTTGCTAAACAAAACATGGAATTAGCCATAAAATTGTCTGCCGCTGCAGCGGCTGCAGTCAGTTCTTCAACAACCGGTGTGGGTGCTGCCGGTTCTACGCCAGCTGATTTAGCAGCTGCCGTTGCGGCAGCTACTAGCAGAGGATCTCTGTTGGGTTTACCAGTTCTACCACCAAATGCCGCAAGCACTGTCCAAGTGCCAACCGCCAATACAAATCAGccacaaatttatgttaaacaaGGTGTTTCAAAGTGCAAAGAATGCAATatcgttttctgcaaatatgAAAATTACTTGGCTCACAAACAGCACTACTGTTCGGCCAGAAATCAAGAAGCACCTGAAGGTGATGCCAAAATATCACCAACACCGCCATTAGCCAGCGGTGCATCTCCTATAGAGACAACGCCAGTGGCCTATCAGCAATTAATATGTGCTGCCTGTGGCATTAAATACACGTCATTGGATAACTTAAGGGCTCATCAAAACTTTTATTGTCCAAAAGGTGGCGGTGTGGCAGCCGCCGGAGCAGCATCAGCTGTGACTTCCAATTCTGATGTCACACATGCAGTTTCTAAAAAGGATAAATGTTCTAAATGTAAAACTATACATGAGCATGCACTGCCTTGTCCTCCTCCACCGGCTTTACAACAGCCACCAACGCCCCAGACCATAGTCTCAGCAAACTCGCAACTACAACAGTCATCAGCAACAAGCACCTCTTCCTCCACCAGTTCCAGTAGCaaccaaaatgtttataaatgccCACTTTGTGATGCTGTAAGCTTAACAGCTAGTGAAAGTCGAAAACATATGGAAACGCATGGCACGGTTAAAGCTTTCAGATGCACTATTTGTCGTTATAAAGGCAACACTTTGAGGGGTATGCGCACCCACATACGCATGCATTTCGATAAGAAAACTTCCGATATAAATGAAGAACATTACATGGCCTGTATATTAGAGGATGAGAGCATTGAAATACCAAGTGCTGCCTCGGTAAATCAAGAACATTTGGTGCAACAGTTGGCTGCTgctcaacaacagcagcagcaacaaaagcaGTTAGTAGCCGCAGCTGCTGTTGTAGCTGCTGGCcttcaacaacagcagcaacaacatacACAGCAGCAGGTGTTCAATTGTGATATTTGTAATTATTCATCAACCTATAAAGGCAATGTGCTGCGCCATATGAAATTGGTACATCCTCATGTTGCCCTTACTTCTCCTTCTATATCACCTGAGGCTGGAGATTTGGATACAACAGAAACAGCCTCATTAAGCAGCAGCCACAATGGGGATAATGGCCTAAATAATTTCACAATCAAGTCTGAACCCATGGATCATAATGCAACAAATACAAGTCCTGCAATTCTCTTAAATCCTCAAGACAATAATAACTCACCCATACCGAATATTGTACACAGTGCCGCAAATGATTTGATGCATCATATTAAATCCGAACCAatggaaatttcaattgaaCCTACAACTTTACATATACCACCGCCAACTGCTCTTCGATCTCCAGCCATAGGGCCACCACCGTTATTAAGCGCTACGCCCGAAGagaatattaatcaaaaatattgccAAACATGTgacatttcatttaattacatGAAAACCTATTTGGCTCACAAGCAATTTTATTGTAAGAATAAACTACGCAGACCAGATACTACTGATAGTCCCAGTCCAAATGCTGTCCAAGTAATAGCAGGCATACCATCGCCAAACACTTTAATGTTgcaaaagaataaagaaaacttaCAAGAAGCCGCCATTTGA
Protein Sequence: MMDEHTEEERRTPQNNHHSYMTHQEQTKETDLERAASQNDEDIEMPTSEEQDMDIQPPLQKRAKMALEEESKGSSPAVQSPLARTTENSNDSVKCDNMRNQRDESNSRDHRSTSPYLRAITPAISPSKEEQEENTDENICSPTSGSIPKLRLNALLASDPALMPDAKDLKVVHEESQTQQRIARLEQHLQQQLQTEDSECIDTERMSAVTSAAVVEPVKKPLSASVEAPPPRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKEADDDSSLSAAITEKSSGSPTQANNSTANLSLATTETTSKVAKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSPNASNNGSVIMEDNSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTDGQLTPKLEVSTTTTTPKVSAAVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPAVVNPDTTCFTLDNGNLKPLATALNISALNAANSLAAAAAPTAQQLSIVESTRQTNLNETLLTEKNIKRNVDESSEHATKRKADGLRESAPLDLSLRRSPIAALLQRQRFNSSSSFLDTEQQRLDMETLLEAGKENLSLDESGSITPEQIVCAPSLPNSPSMSPSPRRRAISPRSSGAGSTSSMSPPATIPPNALSAAANSTNILDNLQLRSMLPAELLNPLLAKQNMELAIKLSAAAAAAVSSSTTGVGAAGSTPADLAAAVAAATSRGSLLGLPVLPPNAASTVQVPTANTNQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEAPEGDAKISPTPPLASGASPIETTPVAYQQLICAACGIKYTSLDNLRAHQNFYCPKGGGVAAAGAASAVTSNSDVTHAVSKKDKCSKCKTIHEHALPCPPPPALQQPPTPQTIVSANSQLQQSSATSTSSSTSSSSNQNVYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDESIEIPSAASVNQEHLVQQLAAAQQQQQQQKQLVAAAAVVAAGLQQQQQQHTQQQVFNCDICNYSSTYKGNVLRHMKLVHPHVALTSPSISPEAGDLDTTETASLSSSHNGDNGLNNFTIKSEPMDHNATNTSPAILLNPQDNNNSPIPNIVHSAANDLMHHIKSEPMEISIEPTTLHIPPPTALRSPAIGPPPLLSATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPDTTDSPSPNAVQVIAGIPSPNTLMLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: iTF_00900107;
80% Identity: -