Basic Information

Insect: Linnaemya tessellans
Gene Symbol: ush
Assembly: GCA_951800035.1
Location: OX637533.1:127466558-127473908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.019 3.5 10.0 0.0 1 20 238 257 238 259 0.90

2 9 0.00042 0.077 15.2 0.8 1 23 314 336 314 336 0.98

3 9 0.07 13 8.2 1.0 2 21 365 384 365 385 0.92

4 9 0.072 13 8.2 2.9 2 21 789 808 788 809 0.93

5 9 0.016 2.9 10.3 0.0 3 21 850 868 848 869 0.92

6 9 0.17 32 7.0 0.1 1 23 958 980 958 980 0.97

7 9 0.019 3.5 10.0 1.4 1 23 986 1008 986 1008 0.99

8 9 0.00047 0.088 15.1 0.6 1 23 1087 1110 1087 1110 0.96

9 9 0.63 1.2e+02 5.2 0.7 2 20 1239 1257 1238 1259 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.019	3.5	10.0	0.0	1	20	238	257	238	259	0.90
2	9	0.00042	0.077	15.2	0.8	1	23	314	336	314	336	0.98
3	9	0.07	13	8.2	1.0	2	21	365	384	365	385	0.92
4	9	0.072	13	8.2	2.9	2	21	789	808	788	809	0.93
5	9	0.016	2.9	10.3	0.0	3	21	850	868	848	869	0.92
6	9	0.17	32	7.0	0.1	1	23	958	980	958	980	0.97
7	9	0.019	3.5	10.0	1.4	1	23	986	1008	986	1008	0.99
8	9	0.00047	0.088	15.1	0.6	1	23	1087	1110	1087	1110	0.96
9	9	0.63	1.2e+02	5.2	0.7	2	20	1239	1257	1238	1259	0.91

Sequence Information

Coding Sequence: ATGGACGATCACACCGAAGAAGATAGAAGAACTCCACAAAATAATCATCATTCCTATAGGCCACATCAAGAGCAAATAAAAGAGACTGATTTGGAAAGGGCGGCGGCAAGTCAAAACGAAGAGGATAGCGACATGCCCACTAATGAAGAACAAGATATTGACATACAACCACCTTTACAGAAAAGACCCAAAATGGCGTTGGAAGACGAAAGTAAAGGAAATAGTCCCGCTGTGCAATCACCTCTGGCAAGAACTACAGAAAACTCAAATGACTCGGTAAAATGTGATAATATGCAAAATCAAAGAGATGAATCCAATTCAAGAGATCATAGATCTACCAGTCCTTATTTACGGACCATCACACCAGCTATAAGTCCCTCGAAAGAAGAAGCGGAACCAGAAGAGCTGGCAAACGAAAGTATTTGCTCTCCCACTTCCGGCTCAATACCTAAACTAAGACTCAATGCTCTATTGGCCTCCGATCCCGCCCTAATGCCAGATGCCAAAGATTTGAAAGTTGTGCACGAAGAATCACAAACTCAACAAAGAATAGCGCGTTTAGAACAGCATCTGCAACAACAATTGCAAACAGAAGAGTCAGAGTGTGTGGACACAGAACGCATGACAGCCGTTGCCAGTGCTGTCGCAGTGGAACCAGCTAAAAAGCCATTATCAGCCTCGGTGGAAGCACCACCGCAACGCATGAAAGTCTTTATGTGCCTACCCTGCGGCATAGGTTTCAGTTCACCCTCCACTTTGGAAGCCCATCAAGCGTATTATTGCTCTCATCGGCATAAAGACACCGACGACGATAGTTCATTGTCCGCAGCCATAACGGAGAAAACCTCAGCCTCTCCAACGCAGGCAAATAATCCCACGGCCAATATATCACTGGCACCGGCGGAAACAACACCAAAAGTTGCCAAGACCGGCAAGCAATACGCCTGTACACAGTGTTCCTATAGCGCTGACAAGAAGGTTTCGCTTAATCGCCACATGCGCATGCATCAGACATCGCCAGCACCCAGCCCCAATGCTTCCAACAACGGCAGTGCCATAATGGAAGATAATTCTAGTCAAcAAGTGGATCGTTATTGCAGCGATTGTGACATACGCTTCAACAATGTGAAAACCTACCGAGCCCATAAGCAGCACTATTGCAGTTCCCGAAGAACAGAAGGGCAATTAACACCGAAATTGGAAGTATCAACCACAACGGCCACGCCAAAAGTTCCGGCTGTGGTTAGTGGCGCCATAAGTCCGCAGACACGAACTAAAACTCCCACACCTGCAATGGTAGCTGCGGCAGCCGCCGCAGCAGCAGCTGCCCTGCAACAGCCTCCGGCCACTCCCTTCCTGGCATTGCCCACAAATCCCATATTAATAATACCATATGCATTGATACGCTCCGCCAGTCTCATAGCAGGACCGTTATCTTCACCTTCGCCGGCTGTGGTAAATCCCGACACCACCTGTTTCACTTTGGATAACGGCAATTTGAAACCTTTAGCCACGGCTCTGAATATCAGTGCTTTAAATGCAGCCAATAGTCTGGCCGCAGCTGCCGCCCCTACAGGACAGCAATTAAGCATCGTAGAGTCTGCGCGTCAAACAAGTTTAAATGAAACTCTGCTCACAGAAAAGAACGTGAAACGGAATGTGGATGAGTCATCGGAGCATACAACAAAGAGAAAAGGAGACGGCTTAAGagaatCAGCGCCCTTGGACTTATCACTACGTCGTTCTCCAATTGCTGCTTTATTGCAAAGACAACGTTTCAATTCCGCCTCATCGTTTTTAGATACCGAACAACAGCGTTTGGACATGGAAACTTTACTAGAAGCGGGCAAAGAAAATTTGTCTCTGGATGAAACTGGCAGTATAACCCCCGAACAAATTGTATGTGCCCCCTCTCTGCCCAACAGCCCCTCAATGAGTCCCTCGCCCCGCAGACGGGCCATAAGTCCCAGAAGTTCCGGCGCCGGCAGTACATCCTCCATGTCACCGCCAGCCACAATACCGCCAAATGCTTTAAGTGCTGCCACTAATCCCACAAATATATTAGATAACTTGCAGTTGCGCTCCATGCTGCCCGCAGAATTATTGAACCCTCTGCTGGCtaaacaaaatatggaattgGCTATAAAATTGTCCGCTGCTGCAGCGGCTGCAGTCAGCTCTTCCACAAGTGGAGTGGGTGCTGCTGGTTCCACACCAGCGGACTTAGCAGCTGCCGTGGCGGCAGCTACCAGCAGAGGATCGCTGTTGGGTTTGCCCGGCTTACCGCCAAATGCTGCAAGCTCAGTTCAGGTGCCAACCGCCAATACAAATCAGCCACAAATTTATGTCAAACAGGGAGTTTCCAAGTGCAAAGAATGCAATATAGTTTTCTGTAAATACGAAAACTATTTGGCGCACAAGCAGCACTACTGCTCCGCCAGAAATCAAGAACCGCCTGAAGGTGAAGCCAAAGTTTCGCCAACACCACCCTTGGCCAGCGGTGCCTCTCCAGTGGAGACAACACCTGTAGCCTACCAACAATTAATATGTGCTGCTTGTGGCATCAAGTACACTTCGTTGGATAATTTAAGAGCTCATCAGAACTTTTATTGTCCAAAAGGTGGTGGTGTGGCAGCCGCCGCCGCCGCAGCAGCAGCTGCATCTGCTGCTTCCAATTCCGACGTCACTCATACAATTGCTAAAAAAGATAAATGCCCTAAATGTAAAACCATACATGAACCGGCACTACCATGTCCACCGCCACCGGCCTTACAACAGCCACCAGCGCCCCAGGCAAACTCGCAACTACAGCAACAGCCATCATCCACAAGCACCTCTGCCTCATCCAGTTCCAGTAGCaaccaaaatgtttacaaatgtCCACTATGTGATGCTGTCAGCTTGACAGCCAGTGAAAGTCGAAAGCACATGGAAACTCATGGCACGGTCAAAGCTTTCAGATGCACTATTTGCCGCTACAAAGGCAACACTTTGAGGGGTATGCGCACTCACATACGCATGCATTTCGATAAGAAAACTTCCGATATAAACGAGGAACACTACATGGCCTGCATCCTGGAGGATGAAAGTATTGAAATACCAAGTGCTGCCTCCTTAAATCAAGAACATTTGGTGCAACAGTTGGCTGCTgcccaacagcagcagcagcaacaaaagcAGTTAGTAGCAGCAGCTGCTGTTGTAGCTGCTGGCcttcaacaacagcagcaacaacagcaacatgcACAGCAGCAGGTGTTCAATTGTGATATTTGTAATTATTCATCAACCTATAAAGGCAATGTGTTGCGTCATATGAAATTGGTACATCCTCATGTGATCCTCACTTCTCCCTCTATATCCCCCGAGGCTGGAGATTTGGACACAATAGAAACAGCCTCATTAAGCAGCAGCCACAATGGGGACAATGGCCTGAATAATTTCACAATCAAGTCTGAACCCATGGATCATAATGCCACAAATACAACAAGTCCTGCAATCCTTTTAAATCCCCATGACAATAACAACTCACCCGTTCCAAATATTGTACATAACGCCGCAAATGATTTGTTGCATCATATTAAATCCGAACCAATGGACATTTCAATTGAACCATCAACACTACATATACCACCGCCAACTGCACTGCGATCACCAGCCATAGGGCCACCACCATTACTAAATGCTACGCCCGAAGagaatataaatcaaaaatattgtcAAACATGTgacatttcatttaattatatgAAAACCTACCTGGCTCACAAGCAATTCTATTGCAAGAACAAACTACGCCGACCAGATACTAATGACAGCCCCAGTCCCAATGCTGGCCAACTAATAACAGGCATACCATCGCCAAACACTTTAATGATGCAAAAGAATAAAGAAAACCTACAAGAAGCCGCCATTTGA
Protein Sequence: MDDHTEEDRRTPQNNHHSYRPHQEQIKETDLERAAASQNEEDSDMPTNEEQDIDIQPPLQKRPKMALEDESKGNSPAVQSPLARTTENSNDSVKCDNMQNQRDESNSRDHRSTSPYLRTITPAISPSKEEAEPEELANESICSPTSGSIPKLRLNALLASDPALMPDAKDLKVVHEESQTQQRIARLEQHLQQQLQTEESECVDTERMTAVASAVAVEPAKKPLSASVEAPPQRMKVFMCLPCGIGFSSPSTLEAHQAYYCSHRHKDTDDDSSLSAAITEKTSASPTQANNPTANISLAPAETTPKVAKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSPNASNNGSAIMEDNSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTEGQLTPKLEVSTTTATPKVPAVVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYALIRSASLIAGPLSSPSPAVVNPDTTCFTLDNGNLKPLATALNISALNAANSLAAAAAPTGQQLSIVESARQTSLNETLLTEKNVKRNVDESSEHTTKRKGDGLRESAPLDLSLRRSPIAALLQRQRFNSASSFLDTEQQRLDMETLLEAGKENLSLDETGSITPEQIVCAPSLPNSPSMSPSPRRRAISPRSSGAGSTSSMSPPATIPPNALSAATNPTNILDNLQLRSMLPAELLNPLLAKQNMELAIKLSAAAAAAVSSSTSGVGAAGSTPADLAAAVAAATSRGSLLGLPGLPPNAASSVQVPTANTNQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPPEGEAKVSPTPPLASGASPVETTPVAYQQLICAACGIKYTSLDNLRAHQNFYCPKGGGVAAAAAAAAAASAASNSDVTHTIAKKDKCPKCKTIHEPALPCPPPPALQQPPAPQANSQLQQQPSSTSTSASSSSSSNQNVYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDESIEIPSAASLNQEHLVQQLAAAQQQQQQQKQLVAAAAVVAAGLQQQQQQQQHAQQQVFNCDICNYSSTYKGNVLRHMKLVHPHVILTSPSISPEAGDLDTIETASLSSSHNGDNGLNNFTIKSEPMDHNATNTTSPAILLNPHDNNNSPVPNIVHNAANDLLHHIKSEPMDISIEPSTLHIPPPTALRSPAIGPPPLLNATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPDTNDSPSPNAGQLITGIPSPNTLMMQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: iTF_00901056;
80% Identity: -