Lvul016757.1
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- -
- Assembly
- GCA_963675445.1
- Location
- OY776277.1:105992814-105997530[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00033 0.039 15.6 0.2 1 23 132 155 132 155 0.97 2 12 0.01 1.2 10.9 3.6 2 23 204 226 200 226 0.88 3 12 0.0018 0.22 13.3 0.6 1 23 355 378 355 378 0.93 4 12 2 2.4e+02 3.7 0.6 2 23 428 450 427 451 0.93 5 12 0.013 1.5 10.6 0.1 1 23 536 559 536 559 0.91 6 12 0.0011 0.13 14.0 2.4 2 23 610 632 610 632 0.97 7 12 1e-05 0.0012 20.4 1.6 1 23 740 763 740 763 0.97 8 12 7.8e-05 0.0092 17.6 0.1 1 23 812 835 812 835 0.95 9 12 0.0013 0.15 13.8 1.1 2 23 885 907 884 907 0.95 10 12 0.026 3.1 9.7 2.8 1 22 988 1009 988 1011 0.91 11 12 9.9 1.2e+03 1.5 0.3 3 20 1065 1082 1063 1084 0.84 12 12 0.035 4.2 9.2 0.0 2 23 1165 1187 1164 1187 0.95
Sequence Information
- Coding Sequence
- atggATAATCTTGAACCCTGGAGCATGTTCGGCAACGATTTAATGTCAGATGATACAAATATGAATGAAATTCAAGGAAGTAGAGAGGGTGGTGCAGATATTCCCTTTTCTATACCATCACCGGTACAAGACATGCAAGTAAAAGAAGAGCCTCAAGAAGTTGCAGATGAAAGCTTCGATGATGATAATGACAACGTTCCACTTAATTTTCTCGCTGAAGGAAATAGtcgaaataataatgatagcCAAACTCGAAATCCAGAGGACGATAACGCTCTCTTCGATTTCGGTTTAGAATCATCAAATTCGCAAAATCGTTCTTTCGAGTATCCTAATTTAGAGCCAGAAGACAAGTACTATAACGCAATGATCAAATTCGAAGAcgctataatatatatatgcccTGCTTGTGGGCATGAGTTCAGCTCTCAAGATGCCTGGAAAAACCACTTGAATGTAAATCATCTTTATAATACACGTCGCGGcctaaattttatacaaattgatAAACTGTACCATGAATGTATGGAGTGCCACAAACGCATTGCAATGCACAGTATGGAAAACTTGCTCAAGCATAAATTCACCCATTTACCCTACCGTTGTAGCAAGTGTATGGTGTGTAAAAGACAGTATAAATATAGACAGGATCTCATGGTACATTTGCGTATGAACCATCGTGACGATTTAATAGAACTTTTAAAGAAAGaacacaaaaattcaaaaaactccAATTCACAACCGCAAACTATTCGTTCAATTTTGAGCAGGGCAGAAGGTAACAATAATAGACCAAGTTTTTCTATTGGAGctgttaaagaaaatgcgaAAGATGTGTTTGATAGTATCGAagtaaaaaatgaattaattaacgAAGATGAGGATGATACAATGGGTGACGATAGTTTGCCACCACCATCTAAAAAATCAGCTAAAGATTTGCCAACTTTTCTTGAAGATGGATCTACAAATGGTTCCGCTAACGACCAAGCTCCTACAAATCGTTGTAATAAACCCGTGCCGGGGGATGAAATAGATatttcacttgaagaatatatattattcacaTGCCCGCAATGTGGAACTGAGTGTGAAACACAAGCTCAATGGCGCCAACATATTGAATTCGTACATGAATTTGGCACAAGAAGAGGTTTGAATTTTCGTGAGCTGCTTAATCAAAAAGTCCAGTGCATGTTTTGTAATTTGatATTGCCAAACACTTCAATACATGGACTGCAATTACATAAATTCAGCCATTTACCATACAAAAAATGGATGAGCTGTAAACTTTGTTTCAACTCATTTAATGTAAATTGGGACATCATTCAACATTTGGCTATTACGCATCATTTAGTTGCGGAAAACACGAAACCAGCACCTGTTTCTGATGTAAACAATGATGAGGATAGTCAAGAAGCATTTGGCTTTGATGGCGTTGGCGATTCTTTTGGTGGTTTAGGTGATGATAATGACtatggtggtggtggtgttggTGTTGGTAGTGACAGTTATGGGTCTTCCGATAGAAAAAATAATCCTCCTCTTCTAGACTCTCAACCAATAAAATATGATGACCGTGACGTATTCGAACAACATATAACATACATTTGTCCAGCATGCGGTAAGGAATACAATGATAAGAAAGTATGGCGCAAACACATTGTAGAAATTCATAAGCTAGGTGAGCTggagaatttaaattttgaaaatataaatgacCGCCAATTGAAATGTAGAGAATGTGATAAGATCATAACAAACGCATATGGCATACAAAATGCCCAACAACATCGTATGACCCACTTACaatataaatcatttgcaaagtGTCGTTTATGTCGCAAAACTTATACCGATCGCAAGGgcttaataaaacatttgagaAATTCCCATAAGCTGGGTATACGAGTAGGTGTTGGCCAAATTAATCCAGTACCATCCAGCACGAGTTATAGTGGATCTGGTAGTGTTGCTACCTTTAAACCATTTGTCAAAAAACCCTATAAGATTGCTCACTATCCACCTAAAGAAATTGTTAGATTATCAAATTATACTTATGAAATTGTACATTTAATCGaagatgatgacgatgacgatgatgtcACTATTACGGGTGGTTATGATTTTGCCAAAGGTGATGCTCATTTATATAGAAACAATTCGCCGTATAGTACACCTTCTAAAAAAATTCCCAATATGGAACAAATAACCAGGCATAAATGTGTCGACTGTGGTACCATATTTCCTACGCCACAATCTCTACAACATCATATTCGAAAAGAACATGATTTTGTTGATTACCGAAATTCTCCCACTACCCAAGTGGCTCGAAATGAGGAAAAATCAAACGATGCCGACGATTTACTAGTTCCCAGTAGGAATGTTGAAGTCCAACCGGAAAACCATGCAACAATGGAAGGTAACTTTATATATCTGTGTCCTCAGTGTGGTGTAGAATTTCGTTCCCAAGTACAATGGCGACGCCACATTAATATCGAACATAATTTTGATAAACGCAGCTCTTTAGGCTTTAGACCTTTAGATAAATTTCGCTATCAGTGTAAAACTTGTAAAGACACAGTAACGAGTTCGAAACTTAAGGGATTACAGGATCATAAATTTAGACACTGTCCgtataaactatatttaaaatgtCTACTGTGCGGCCAATCGTATAATCATAAACCTAATATGATAGCGCATTTACGACAAAGACACAATATTGTGGAAGTTACAGATGCAGGAGCGGGAGCTGCAGCAGGAGCAGCATCGTCTTCCACAGATCATACGCAACCCAGACATGCATCAAATTCAAACAATAAAGAATTTAATGATGCTCCAGCCAGACTCATACGATATCCTGATCCTACCTTCAATAACTCAAATCGACCACCAGGTTTAAAGACAGTCGAAGATGTTATATCCTTTCACAATGCTGTCGATCATGAATCGATTACGTATCGTTGTCCATCGtgtaacaaacattttgattctCATGTCTTTTGGCGCAAACACATTGTAGACGAACACAATCTTAATAGTAGAGAAGGTTTGAATTTTCGTCAATTGGATGAACATCATTATATATGTTTGCAATGTTATAAACGTGTTACAGTTACTCATACCAAGGGCGCCATCGGTCAACTGCAATCGCATAAATTTAGACATTTGCCATACAAATCATTCCGTTGTATTGCTTGCGACGGAGAATTTGTACGTaaacaaatgtttttcaaaCACTTAGATAAAAACACCAACAAATGCTCTGGCATAAATCCTGATAATAGTTTCGCCGATGCTGCCGACAATAGCACAGTTCCAATTAATAATGATGAAGATGGCACTGATGATTTGAGTTCTACAATTACGGAAAAAGCTGGTTCTTCTTCAACGAAATTCTCTTGGCCCACGCGCTCCTCACTGCCAGCTCAATCGACAAGTACTGCTAATAATGAATCAATATCAGATAATCAGGGGTGCTTTACTCTAAATTGTCCACAGTGTGGAGCAGATTTTGAAACGACACGTGGTTGGCGGGAACACATTAATATTGAACACAATCTCAATAATAGAActgtattaaatttcaaaaaaattagtgCCAAACTCCATCTATGTTTGGAATGCAACGAACACGTGAATGGTAGAAAACTGCGCGATCTGCAAGTACACAAGTTTAAACACTTACCTTACGGAGCCTATTTGCATTGTCGCTTTTGTTCTATGAAATATTTCCACATAAGCAATATGCaggaacatttaaaaaataaacatccgAATATGGTgcagaaaatgaaaaactatgAAGATGATTGTGGTATTATGGATGAAGACGATGATGCCAATGTGGATGGCAGCAACGATGCAGATGCGGCACTGGATGGTGAAGGGGATGACAGTAATATCGGTTTGGAAGATGGAATCGATATAGATTTGTTAGAGGCCGAAGCTGAAATTGAAGAAGTTGATCCTGATAATGTTGAATCTGATGAACAATATCTCTTAGgttaa
- Protein Sequence
- MDNLEPWSMFGNDLMSDDTNMNEIQGSREGGADIPFSIPSPVQDMQVKEEPQEVADESFDDDNDNVPLNFLAEGNSRNNNDSQTRNPEDDNALFDFGLESSNSQNRSFEYPNLEPEDKYYNAMIKFEDAIIYICPACGHEFSSQDAWKNHLNVNHLYNTRRGLNFIQIDKLYHECMECHKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRMNHRDDLIELLKKEHKNSKNSNSQPQTIRSILSRAEGNNNRPSFSIGAVKENAKDVFDSIEVKNELINEDEDDTMGDDSLPPPSKKSAKDLPTFLEDGSTNGSANDQAPTNRCNKPVPGDEIDISLEEYILFTCPQCGTECETQAQWRQHIEFVHEFGTRRGLNFRELLNQKVQCMFCNLILPNTSIHGLQLHKFSHLPYKKWMSCKLCFNSFNVNWDIIQHLAITHHLVAENTKPAPVSDVNNDEDSQEAFGFDGVGDSFGGLGDDNDYGGGGVGVGSDSYGSSDRKNNPPLLDSQPIKYDDRDVFEQHITYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFENINDRQLKCRECDKIITNAYGIQNAQQHRMTHLQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGIRVGVGQINPVPSSTSYSGSGSVATFKPFVKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTITGGYDFAKGDAHLYRNNSPYSTPSKKIPNMEQITRHKCVDCGTIFPTPQSLQHHIRKEHDFVDYRNSPTTQVARNEEKSNDADDLLVPSRNVEVQPENHATMEGNFIYLCPQCGVEFRSQVQWRRHINIEHNFDKRSSLGFRPLDKFRYQCKTCKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVEVTDAGAGAAAGAASSSTDHTQPRHASNSNNKEFNDAPARLIRYPDPTFNNSNRPPGLKTVEDVISFHNAVDHESITYRCPSCNKHFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCIACDGEFVRKQMFFKHLDKNTNKCSGINPDNSFADAADNSTVPINNDEDGTDDLSSTITEKAGSSSTKFSWPTRSSLPAQSTSTANNESISDNQGCFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKISAKLHLCLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKMKNYEDDCGIMDEDDDANVDGSNDADAALDGEGDDSNIGLEDGIDIDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742345;
- 90% Identity
- iTF_00900100;
- 80% Identity
- -